Variant report

Variant	rs73010969
Chromosome Location	chr3:150502668-150502669
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs73003798	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73010951	1.00[AMR][1000 genomes]
rs73010958	1.00[AMR][1000 genomes]
rs73010978	0.85[AMR][1000 genomes]
rs7621184	0.85[AMR][1000 genomes]
rs7624442	0.85[AMR][1000 genomes]
rs7643407	0.85[AMR][1000 genomes]
rs7651357	0.85[AMR][1000 genomes]
rs7652779	0.85[AMR][1000 genomes]
rs8072	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150500200-150505400	Weak transcription	Brain Substantia Nigra	brain
2	chr3:150501200-150504000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr3:150501800-150503000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr3:150501800-150503200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:150501800-150506000	Enhancers	NHEK	skin
6	chr3:150502000-150502800	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr3:150502000-150503200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr3:150502000-150503200	Weak transcription	Placenta	Placenta
9	chr3:150502000-150503200	Enhancers	Osteobl	bone
10	chr3:150502200-150503000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr3:150502400-150502800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:150502400-150503000	Enhancers	HUVEC	blood vessel
13	chr3:150502600-150502800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:150502600-150502800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:150502600-150503200	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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