Variant report

Variant	rs7652779
Chromosome Location	chr3:150521300-150521301
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs6793624	0.87[AMR][1000 genomes]
rs73003798	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73005806	0.87[AMR][1000 genomes]
rs73010951	0.85[AMR][1000 genomes]
rs73010958	0.85[AMR][1000 genomes]
rs73010969	0.85[AMR][1000 genomes]
rs7621184	0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7624442	1.00[AMR][1000 genomes]
rs7631987	0.87[AMR][1000 genomes]
rs7643407	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7651357	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150516400-150521400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr3:150516400-150521400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr3:150516400-150521600	Weak transcription	Gastric	stomach
4	chr3:150516600-150521400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr3:150516600-150523200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr3:150516800-150522600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:150517000-150521400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr3:150517000-150522600	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr3:150517800-150522400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr3:150521200-150521400	Enhancers	ES-WA7 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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