Variant report

Variant	rs7624442
Chromosome Location	chr3:150522700-150522701
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16862837	1.00[TSI][hapmap]
rs1879421	1.00[TSI][hapmap]
rs2018246	1.00[TSI][hapmap]
rs34348847	1.00[TSI][hapmap]
rs3851356	1.00[TSI][hapmap]
rs6440697	1.00[TSI][hapmap]
rs6788895	1.00[TSI][hapmap]
rs6793624	0.87[AMR][1000 genomes]
rs6805481	1.00[TSI][hapmap]
rs73003798	1.00[AMR][1000 genomes]
rs73005806	0.87[AMR][1000 genomes]
rs73010951	0.85[AMR][1000 genomes]
rs73010958	0.85[AMR][1000 genomes]
rs73010969	0.85[AMR][1000 genomes]
rs7617507	1.00[TSI][hapmap]
rs7621184	1.00[AMR][1000 genomes]
rs7631987	0.87[AMR][1000 genomes]
rs7643407	1.00[AMR][1000 genomes]
rs7651357	1.00[AMR][1000 genomes]
rs7652779	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532662	chr3:150180747-150633414	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	101 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150516600-150523200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:150521400-150525200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr3:150521600-150524800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:150521600-150525000	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr3:150521800-150522800	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:150521800-150522800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr3:150521800-150523000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:150521800-150523000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr3:150522400-150523800	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr3:150522400-150524000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr3:150522400-150525000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr3:150522400-150525200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr3:150522600-150523600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:150522600-150524000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr3:150522600-150524800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr3:150522600-150525000	Enhancers	HUES6 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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