Variant report

Variant	rs6823467
Chromosome Location	chr4:86688153-86688154
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10516753	1.00[AMR][1000 genomes]
rs10516754	1.00[AMR][1000 genomes]
rs11931466	1.00[AMR][1000 genomes]
rs1482082	1.00[AMR][1000 genomes]
rs17010594	1.00[AMR][1000 genomes]
rs17010650	1.00[AMR][1000 genomes]
rs17010773	1.00[AMR][1000 genomes]
rs17010775	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17010777	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1994082	1.00[AMR][1000 genomes]
rs6841314	1.00[AMR][1000 genomes]
rs6851145	1.00[AMR][1000 genomes]
rs72972865	1.00[AMR][1000 genomes]
rs72972875	1.00[AMR][1000 genomes]
rs7656548	1.00[AMR][1000 genomes]
rs7684018	1.00[AMR][1000 genomes]
rs7695679	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879517	chr4:86677107-86739805	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86663400-86699800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:86676800-86697800	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr4:86682000-86697000	Weak transcription	Psoas Muscle	Psoas
4	chr4:86683200-86699000	Weak transcription	Primary B cells from cord blood	blood
5	chr4:86683800-86695200	Weak transcription	HMEC	breast
6	chr4:86684000-86688600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr4:86684600-86695800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr4:86684800-86688600	Weak transcription	Fetal Stomach	stomach
9	chr4:86684800-86695200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr4:86684800-86705600	Weak transcription	Small Intestine	intestine
11	chr4:86685800-86688600	Enhancers	Fetal Kidney	kidney
12	chr4:86686200-86688400	Weak transcription	Fetal Lung	lung
13	chr4:86686200-86695000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr4:86686800-86688600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr4:86687000-86688600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr4:86687400-86688200	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr4:86687400-86688600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr4:86687600-86688200	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr4:86687600-86688400	Enhancers	Adipose Nuclei	Adipose
20	chr4:86687800-86689800	Weak transcription	HUVEC	blood vessel
21	chr4:86687800-86693600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr4:86688000-86688600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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