The 2.0 version of rSNPBase

Variant report

Variant rs6828500
Chromosome Location chr4:48767495-48767496
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:86 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:48731600-48779800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
2 chr4:48742000-48768400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
3 chr4:48742600-48768200 Weak transcription Pancreas Pancrea
4 chr4:48747200-48777200 Weak transcription Fetal Intestine Small intestine
5 chr4:48747400-48767800 Weak transcription Fetal Intestine Large intestine
6 chr4:48749200-48768200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
7 chr4:48751000-48768400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
8 chr4:48751600-48777200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
9 chr4:48754600-48768000 Weak transcription Sigmoid Colon Sigmoid Colon
10 chr4:48754800-48774200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
11 chr4:48755000-48773600 Weak transcription Aorta Aorta
12 chr4:48755200-48768400 Weak transcription Fetal Thymus thymus
13 chr4:48755200-48769400 Weak transcription Monocytes-CD14+_RO01746 blood
14 chr4:48755200-48774200 Weak transcription Primary neutrophils fromperipheralblood blood
15 chr4:48755400-48768200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
16 chr4:48755400-48775600 Weak transcription Rectal Mucosa Donor 31 rectum
17 chr4:48755600-48774800 Weak transcription Rectal Mucosa Donor 29 rectum
18 chr4:48756000-48773000 Weak transcription HUVEC blood vessel
19 chr4:48756000-48774800 Weak transcription Primary hematopoietic stem cells blood
20 chr4:48756200-48774200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
21 chr4:48756600-48768600 Weak transcription HUES64 Cell Line embryonic stem cell
22 chr4:48756600-48769600 Weak transcription Primary T cells from cord blood blood
23 chr4:48759000-48768200 Weak transcription Brain Substantia Nigra brain
24 chr4:48759000-48775600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
25 chr4:48759000-48778600 Weak transcription Fetal Stomach stomach
26 chr4:48759200-48768200 Weak transcription Small Intestine intestine
27 chr4:48759200-48769200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
28 chr4:48759200-48769600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
29 chr4:48759200-48775400 Weak transcription NHEK skin
30 chr4:48759200-48775600 Weak transcription HMEC breast
31 chr4:48761000-48779800 Weak transcription Placenta Placenta
32 chr4:48761200-48768200 Weak transcription Esophagus oesophagus
33 chr4:48761600-48768400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
34 chr4:48761600-48768400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
35 chr4:48761800-48768400 Weak transcription Duodenum Mucosa Duodenum
36 chr4:48761800-48769200 Weak transcription Primary hematopoietic stem cells short term culture blood
37 chr4:48762000-48768400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
38 chr4:48762000-48768400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr4:48762000-48769200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
40 chr4:48762000-48769200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr4:48762000-48775200 Weak transcription Fetal Lung lung
42 chr4:48762000-48777200 Weak transcription HUES6 Cell Line embryonic stem cell
43 chr4:48763000-48779800 Weak transcription Fetal Adrenal Gland Adrenal Gland
44 chr4:48763800-48770400 Enhancers Primary T helper cells PMA-I stimulated --
45 chr4:48764000-48775000 Weak transcription Duodenum Smooth Muscle Duodenum
46 chr4:48764200-48767600 Weak transcription Skeletal Muscle Male skeletal muscle
47 chr4:48764200-48768200 Weak transcription Brain Anterior Caudate brain
48 chr4:48764200-48768200 Weak transcription Brain Cingulate Gyrus brain
49 chr4:48764200-48768200 Weak transcription Left Ventricle heart
50 chr4:48764200-48768200 Weak transcription Right Atrium heart

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Last update: Aug 31, 2015