Variant report

Variant	rs6860342
Chromosome Location	chr5:37445282-37445283
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs55789634	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55964759	1.00[AMR][1000 genomes]
rs56103322	1.00[AMR][1000 genomes]
rs56341418	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56347315	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56364459	1.00[AMR][1000 genomes]
rs57825896	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58870605	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60568621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61742643	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6866115	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6876361	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6880384	1.00[AMR][1000 genomes]
rs6886211	1.00[AMR][1000 genomes]
rs6889709	1.00[AMR][1000 genomes]
rs73749028	1.00[AMR][1000 genomes]
rs73749029	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73749030	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73749031	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73749034	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73749036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73749038	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73749041	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73749042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73749045	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73749047	1.00[AMR][1000 genomes]
rs73749049	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73749052	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73749053	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73749067	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73749068	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73749069	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73749070	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73749071	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73749072	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7703724	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7726448	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530226	chr5:36906377-37606367	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv534064	chr5:37054962-37586210	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv881511	chr5:37088627-37552852	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
4	nsv1026554	chr5:37112133-37734859	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	nsv537726	chr5:37112133-37734859	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
6	nsv1025988	chr5:37115142-37586211	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
7	nsv537727	chr5:37115142-37586211	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
8	nsv530227	chr5:37157106-37571999	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
9	nsv880839	chr5:37173930-37465126	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
10	nsv948741	chr5:37179341-37582164	Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
11	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
12	nsv880817	chr5:37239240-37465126	Weak transcription Bivalent Enhancer Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
13	nsv881492	chr5:37239240-37543121	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
14	nsv880444	chr5:37239240-37556926	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
15	nsv1015983	chr5:37240827-37666601	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
16	nsv1021284	chr5:37264275-37630188	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
17	nsv1029088	chr5:37285576-37604945	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
18	nsv597844	chr5:37287836-37567851	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
19	nsv881076	chr5:37294473-37479198	Enhancers Strong transcription Active TSS Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
20	nsv1028058	chr5:37302941-37581735	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
21	nsv537728	chr5:37302941-37581735	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
22	nsv1023871	chr5:37330018-37804744	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
23	nsv537729	chr5:37330018-37804744	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
24	nsv1028054	chr5:37331852-37586211	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
25	nsv537730	chr5:37331852-37586211	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
26	nsv471012	chr5:37349895-37545998	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
27	nsv597845	chr5:37369958-37556926	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
28	nsv432744	chr5:37374124-37743077	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
29	nsv1034094	chr5:37406859-37666704	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
30	nsv537731	chr5:37406859-37666704	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
31	nsv1015514	chr5:37409579-37522074	Strong transcription ZNF genes & repeats Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
32	nsv597846	chr5:37430215-37813591	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
33	nsv1018722	chr5:37438609-37507131	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
34	nsv880327	chr5:37443079-37567267	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
35	nsv880890	chr5:37443079-37681646	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
36	nsv968168	chr5:37443092-37487412	Weak transcription Strong transcription ZNF genes & repeats Enhancers Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37380200-37446800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr5:37380200-37446800	Weak transcription	Fetal Brain Male	brain
3	chr5:37380200-37451200	Weak transcription	Right Ventricle	heart
4	chr5:37393200-37451400	Weak transcription	Pancreas	Pancrea
5	chr5:37395400-37447000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr5:37396800-37454600	Weak transcription	A549	lung
7	chr5:37397200-37446600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr5:37401000-37454000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr5:37401200-37452200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:37406200-37451800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr5:37406400-37446800	Weak transcription	Brain Substantia Nigra	brain
12	chr5:37406600-37451800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr5:37406800-37451600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr5:37410600-37471000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr5:37413000-37457400	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr5:37418000-37457200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:37418200-37460000	Weak transcription	Brain Angular Gyrus	brain
18	chr5:37419400-37454000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr5:37420800-37480200	Weak transcription	Brain Hippocampus Middle	brain
20	chr5:37421400-37455800	Weak transcription	Fetal Brain Female	brain
21	chr5:37421600-37454000	Weak transcription	NHDF-Ad	bronchial
22	chr5:37421600-37478400	Weak transcription	Aorta	Aorta
23	chr5:37424800-37463600	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr5:37425400-37480200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr5:37425600-37446600	Weak transcription	Brain Anterior Caudate	brain
26	chr5:37425600-37446800	Weak transcription	Brain Germinal Matrix	brain
27	chr5:37425600-37451800	Weak transcription	Lung	lung
28	chr5:37425600-37452200	Weak transcription	Spleen	Spleen
29	chr5:37425800-37471000	Weak transcription	Fetal Lung	lung
30	chr5:37426000-37479800	Weak transcription	HSMM	muscle
31	chr5:37426800-37463600	Weak transcription	HSMMtube	muscle
32	chr5:37427000-37452200	Weak transcription	Primary hematopoietic stem cells	blood
33	chr5:37431800-37471000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr5:37433600-37449000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr5:37435600-37454000	Weak transcription	Osteobl	bone
36	chr5:37435600-37480000	Weak transcription	Rectal Smooth Muscle	rectum
37	chr5:37435800-37447600	Weak transcription	NHLF	lung
38	chr5:37436000-37450800	Weak transcription	NH-A	brain
39	chr5:37436800-37452400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr5:37436800-37452800	Weak transcription	HepG2	liver
41	chr5:37436800-37452800	Weak transcription	K562	blood
42	chr5:37436800-37463000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr5:37437800-37446400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr5:37438400-37454000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr5:37438800-37450400	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr5:37438800-37452200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr5:37439400-37451600	Weak transcription	Esophagus	oesophagus
48	chr5:37441000-37464600	Weak transcription	Psoas Muscle	Psoas
49	chr5:37441600-37445600	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr5:37442000-37450800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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