Variant report

Variant	rs6878470
Chromosome Location	chr5:41541003-41541004
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs57298536	0.92[AFR][1000 genomes]
rs57590605	0.92[AFR][1000 genomes]
rs59447468	0.92[AFR][1000 genomes]
rs59814375	0.92[AFR][1000 genomes]
rs60682637	0.92[AFR][1000 genomes]
rs60707515	0.92[AFR][1000 genomes]
rs6877857	0.92[AFR][1000 genomes]
rs6878319	1.00[AFR][1000 genomes]
rs6896481	1.00[AFR][1000 genomes]
rs6896632	1.00[AFR][1000 genomes]
rs73081539	0.89[AFR][1000 genomes]
rs73081544	0.92[AFR][1000 genomes]
rs73081547	0.86[AFR][1000 genomes]
rs73081549	0.92[AFR][1000 genomes]
rs73081560	0.92[AFR][1000 genomes]
rs73081564	0.92[AFR][1000 genomes]
rs73081567	0.92[AFR][1000 genomes]
rs73081569	0.92[AFR][1000 genomes]
rs73081571	0.92[AFR][1000 genomes]
rs73081574	0.92[AFR][1000 genomes]
rs73081580	0.92[AFR][1000 genomes]
rs73081589	0.92[AFR][1000 genomes]
rs73081590	0.92[AFR][1000 genomes]
rs73081593	0.92[AFR][1000 genomes]
rs73081595	0.92[AFR][1000 genomes]
rs73081599	0.92[AFR][1000 genomes]
rs73083608	1.00[AFR][1000 genomes]
rs73083611	1.00[AFR][1000 genomes]
rs7705479	0.92[AFR][1000 genomes]
rs7709197	1.00[MKK][hapmap]
rs7730181	0.92[AFR][1000 genomes]
rs7730189	1.00[YRI][hapmap];0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028390	chr5:41537220-41561373	Weak transcription Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41540200-41541200	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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