Variant report
| Variant | rs73083611 |
|---|---|
| Chromosome Location | chr5:41539090-41539091 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:41519924..41522470-chr5:41537581..41539242,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs57298536 | 0.92[AFR][1000 genomes] |
| rs57590605 | 0.92[AFR][1000 genomes] |
| rs59447468 | 0.92[AFR][1000 genomes] |
| rs59814375 | 0.92[AFR][1000 genomes] |
| rs60682637 | 0.92[AFR][1000 genomes] |
| rs60707515 | 0.92[AFR][1000 genomes] |
| rs6877857 | 0.92[AFR][1000 genomes] |
| rs6878319 | 1.00[AFR][1000 genomes] |
| rs6878470 | 1.00[AFR][1000 genomes] |
| rs6896481 | 1.00[AFR][1000 genomes] |
| rs6896632 | 1.00[AFR][1000 genomes] |
| rs73081539 | 0.89[AFR][1000 genomes] |
| rs73081544 | 0.92[AFR][1000 genomes] |
| rs73081547 | 0.86[AFR][1000 genomes] |
| rs73081549 | 0.92[AFR][1000 genomes] |
| rs73081560 | 0.92[AFR][1000 genomes] |
| rs73081564 | 0.92[AFR][1000 genomes] |
| rs73081567 | 0.92[AFR][1000 genomes] |
| rs73081569 | 0.92[AFR][1000 genomes] |
| rs73081571 | 0.92[AFR][1000 genomes] |
| rs73081574 | 0.92[AFR][1000 genomes] |
| rs73081580 | 0.92[AFR][1000 genomes] |
| rs73081589 | 0.92[AFR][1000 genomes] |
| rs73081590 | 0.92[AFR][1000 genomes] |
| rs73081593 | 0.92[AFR][1000 genomes] |
| rs73081595 | 0.92[AFR][1000 genomes] |
| rs73081599 | 0.92[AFR][1000 genomes] |
| rs73083608 | 1.00[AFR][1000 genomes] |
| rs7705479 | 0.92[AFR][1000 genomes] |
| rs7730181 | 0.92[AFR][1000 genomes] |
| rs7730189 | 0.92[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1028390 | chr5:41537220-41561373 | Weak transcription Enhancers Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:41538400-41540200 | Enhancers | Fetal Heart | heart |
