Variant report

Variant	rs6877857
Chromosome Location	chr5:41519721-41519722
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:41347520..41348251-chr5:41519488..41520504,4	MCF-7	breast:
2	chr5:41270289..41271289-chr5:41519608..41520573,6	MCF-7	breast:
3	chr5:41347768..41348307-chr5:41519600..41520181,3	MCF-7	breast:

rs_ID	r²[population]
rs57298536	1.00[AFR][1000 genomes]
rs57590605	1.00[AFR][1000 genomes]
rs59447468	1.00[AFR][1000 genomes]
rs59814375	1.00[AFR][1000 genomes]
rs60682637	1.00[AFR][1000 genomes]
rs60707515	1.00[AFR][1000 genomes]
rs6878319	0.92[AFR][1000 genomes]
rs6878470	0.92[AFR][1000 genomes]
rs6896481	0.92[AFR][1000 genomes]
rs6896632	0.92[AFR][1000 genomes]
rs73081512	0.81[AFR][1000 genomes]
rs73081518	0.81[AFR][1000 genomes]
rs73081519	0.81[AFR][1000 genomes]
rs73081521	0.81[AFR][1000 genomes]
rs73081522	0.81[AFR][1000 genomes]
rs73081525	0.81[AFR][1000 genomes]
rs73081527	0.81[AFR][1000 genomes]
rs73081530	0.81[AFR][1000 genomes]
rs73081536	0.81[AFR][1000 genomes]
rs73081539	0.96[AFR][1000 genomes]
rs73081544	1.00[AFR][1000 genomes]
rs73081547	0.93[AFR][1000 genomes]
rs73081549	1.00[AFR][1000 genomes]
rs73081560	1.00[AFR][1000 genomes]
rs73081564	1.00[AFR][1000 genomes]
rs73081567	1.00[AFR][1000 genomes]
rs73081569	1.00[AFR][1000 genomes]
rs73081571	1.00[AFR][1000 genomes]
rs73081574	1.00[AFR][1000 genomes]
rs73081580	1.00[AFR][1000 genomes]
rs73081589	1.00[AFR][1000 genomes]
rs73081590	1.00[AFR][1000 genomes]
rs73081593	1.00[AFR][1000 genomes]
rs73081595	1.00[AFR][1000 genomes]
rs73081599	1.00[AFR][1000 genomes]
rs73083608	0.92[AFR][1000 genomes]
rs73083611	0.92[AFR][1000 genomes]
rs7705479	1.00[AFR][1000 genomes]
rs7709077	0.81[AFR][1000 genomes]
rs7709197	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.81[AFR][1000 genomes]
rs7710332	0.81[AFR][1000 genomes]
rs7710721	0.81[AFR][1000 genomes]
rs7711043	0.81[AFR][1000 genomes]
rs7711241	0.81[AFR][1000 genomes]
rs7730181	1.00[AFR][1000 genomes]
rs7730189	0.90[YRI][hapmap];1.00[AFR][1000 genomes]

SNP	Gene	Cis/trans	Tissue	Source
rs6877857	HBD	trans	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41511800-41521800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:41511800-41521800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:41513200-41519800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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