Variant report
| Variant | rs57590605 |
|---|---|
| Chromosome Location | chr5:41522182-41522183 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:41519924..41522470-chr5:41537581..41539242,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:46)
| rs_ID | r2[population] |
|---|---|
| rs57298536 | 1.00[AFR][1000 genomes] |
| rs59447468 | 1.00[AFR][1000 genomes] |
| rs59814375 | 1.00[AFR][1000 genomes] |
| rs60682637 | 1.00[AFR][1000 genomes] |
| rs60707515 | 1.00[AFR][1000 genomes] |
| rs6877857 | 1.00[AFR][1000 genomes] |
| rs6878319 | 0.92[AFR][1000 genomes] |
| rs6878470 | 0.92[AFR][1000 genomes] |
| rs6896481 | 0.92[AFR][1000 genomes] |
| rs6896632 | 0.92[AFR][1000 genomes] |
| rs73081512 | 0.81[AFR][1000 genomes] |
| rs73081518 | 0.81[AFR][1000 genomes] |
| rs73081519 | 0.81[AFR][1000 genomes] |
| rs73081521 | 0.81[AFR][1000 genomes] |
| rs73081522 | 0.81[AFR][1000 genomes] |
| rs73081525 | 0.81[AFR][1000 genomes] |
| rs73081527 | 0.81[AFR][1000 genomes] |
| rs73081530 | 0.81[AFR][1000 genomes] |
| rs73081536 | 0.81[AFR][1000 genomes] |
| rs73081539 | 0.96[AFR][1000 genomes] |
| rs73081544 | 1.00[AFR][1000 genomes] |
| rs73081547 | 0.93[AFR][1000 genomes] |
| rs73081549 | 1.00[AFR][1000 genomes] |
| rs73081560 | 1.00[AFR][1000 genomes] |
| rs73081564 | 1.00[AFR][1000 genomes] |
| rs73081567 | 1.00[AFR][1000 genomes] |
| rs73081569 | 1.00[AFR][1000 genomes] |
| rs73081571 | 1.00[AFR][1000 genomes] |
| rs73081574 | 1.00[AFR][1000 genomes] |
| rs73081580 | 1.00[AFR][1000 genomes] |
| rs73081589 | 1.00[AFR][1000 genomes] |
| rs73081590 | 1.00[AFR][1000 genomes] |
| rs73081593 | 1.00[AFR][1000 genomes] |
| rs73081595 | 1.00[AFR][1000 genomes] |
| rs73081599 | 1.00[AFR][1000 genomes] |
| rs73083608 | 0.92[AFR][1000 genomes] |
| rs73083611 | 0.92[AFR][1000 genomes] |
| rs7705479 | 1.00[AFR][1000 genomes] |
| rs7709077 | 0.81[AFR][1000 genomes] |
| rs7709197 | 0.81[AFR][1000 genomes] |
| rs7710332 | 0.81[AFR][1000 genomes] |
| rs7710721 | 0.81[AFR][1000 genomes] |
| rs7711043 | 0.81[AFR][1000 genomes] |
| rs7711241 | 0.81[AFR][1000 genomes] |
| rs7730181 | 1.00[AFR][1000 genomes] |
| rs7730189 | 1.00[AFR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:41521800-41522200 | Enhancers | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
| 2 | chr5:41521800-41522400 | Enhancers | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
| 3 | chr5:41522000-41523200 | Weak transcription | Fetal Heart | heart |
