Variant report

Variant	rs6884786
Chromosome Location	chr5:37575938-37575939
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:37574620..37576476-chr5:37584938..37587005,2	K562	blood:
2	chr5:37565296..37570234-chr5:37571928..37578079,8	K562	blood:
3	chr5:37572624..37576201-chr5:37577602..37583153,5	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10039671	1.00[AMR][1000 genomes]
rs10041819	0.89[AMR][1000 genomes]
rs10043479	0.89[AMR][1000 genomes]
rs10044858	0.89[AMR][1000 genomes]
rs10053688	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10054907	1.00[AMR][1000 genomes]
rs10054979	1.00[AMR][1000 genomes]
rs10057290	0.89[AMR][1000 genomes]
rs10057432	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10057617	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10061422	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10063753	1.00[AMR][1000 genomes]
rs10065144	1.00[AMR][1000 genomes]
rs10071775	0.89[AMR][1000 genomes]
rs10075873	0.89[AMR][1000 genomes]
rs10223225	0.89[AMR][1000 genomes]
rs10223294	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10473056	1.00[AMR][1000 genomes]
rs13357561	0.87[AMR][1000 genomes]
rs13436170	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35796036	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6863019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6874531	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73061755	0.89[AMR][1000 genomes]
rs7711100	1.00[AMR][1000 genomes]
rs7728951	0.89[AMR][1000 genomes]
rs9292657	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530226	chr5:36906377-37606367	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv534064	chr5:37054962-37586210	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv1026554	chr5:37112133-37734859	Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
4	nsv537726	chr5:37112133-37734859	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	nsv1025988	chr5:37115142-37586211	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
6	nsv537727	chr5:37115142-37586211	Strong transcription Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
7	nsv948741	chr5:37179341-37582164	Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
8	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
9	nsv1015983	chr5:37240827-37666601	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
10	nsv1021284	chr5:37264275-37630188	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
11	nsv1029088	chr5:37285576-37604945	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
12	nsv1028058	chr5:37302941-37581735	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
13	nsv537728	chr5:37302941-37581735	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
14	nsv1023871	chr5:37330018-37804744	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
15	nsv537729	chr5:37330018-37804744	Weak transcription Flanking Active TSS Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
16	nsv1028054	chr5:37331852-37586211	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
17	nsv537730	chr5:37331852-37586211	Strong transcription Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
18	nsv432744	chr5:37374124-37743077	ZNF genes & repeats Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
19	nsv1034094	chr5:37406859-37666704	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
20	nsv537731	chr5:37406859-37666704	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
21	nsv597846	chr5:37430215-37813591	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
22	nsv880890	chr5:37443079-37681646	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
23	nsv1030250	chr5:37478163-37734859	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
24	nsv881383	chr5:37485316-37773877	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
25	nsv1028838	chr5:37538075-37583196	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
26	nsv881497	chr5:37539060-37604856	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37540000-37621000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:37555000-37616200	Weak transcription	Aorta	Aorta
3	chr5:37559800-37590000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr5:37568200-37578400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr5:37568400-37577000	Weak transcription	HSMMtube	muscle
6	chr5:37568400-37577200	Weak transcription	Fetal Muscle Leg	muscle
7	chr5:37568400-37582200	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr5:37569200-37578200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr5:37571800-37583000	Weak transcription	Fetal Muscle Trunk	muscle
10	chr5:37572200-37592800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr5:37572200-37620600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr5:37572400-37576600	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr5:37572400-37577200	Weak transcription	Hela-S3	cervix
14	chr5:37572800-37592200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr5:37573400-37590600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr5:37574000-37579400	Enhancers	Fetal Intestine Small	intestine
17	chr5:37574200-37579400	Enhancers	Fetal Intestine Large	intestine
18	chr5:37574400-37581800	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr5:37574400-37590000	Weak transcription	Adipose Nuclei	Adipose
20	chr5:37574600-37577400	Weak transcription	Psoas Muscle	Psoas
21	chr5:37574600-37584800	Weak transcription	Primary T cells from cord blood	blood
22	chr5:37574600-37587000	Weak transcription	Primary B cells from cord blood	blood
23	chr5:37574800-37588400	Weak transcription	Ovary	ovary
24	chr5:37575400-37576800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr5:37575400-37576800	Enhancers	Stomach Mucosa	stomach
26	chr5:37575400-37578200	Enhancers	Primary hematopoietic stem cells	blood
27	chr5:37575400-37578200	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr5:37575400-37578200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr5:37575600-37576000	Enhancers	Left Ventricle	heart
30	chr5:37575600-37576000	Enhancers	Small Intestine	intestine
31	chr5:37575600-37576200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr5:37575600-37576400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr5:37575600-37578200	Enhancers	K562	blood
34	chr5:37575600-37599600	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr5:37575600-37611600	Weak transcription	Pancreas	Pancrea
36	chr5:37575800-37576000	Enhancers	HepG2	liver
37	chr5:37575800-37576200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr5:37575800-37576200	Enhancers	Duodenum Mucosa	Duodenum
39	chr5:37575800-37576400	Enhancers	Right Atrium	heart
40	chr5:37575800-37576600	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr5:37575800-37576600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr5:37575800-37577000	Enhancers	Primary T regulatory cells fromperipheralblood	blood

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