Variant report

Variant	rs6900723
Chromosome Location	chr6:23876240-23876241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11756885	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1355458	0.84[EUR][1000 genomes]
rs1355459	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17299436	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17299457	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2036886	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2036887	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2036888	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2036889	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2221824	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4327688	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs58398055	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6908183	0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6921319	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7741044	0.95[EUR][1000 genomes]
rs7752738	0.91[EUR][1000 genomes]
rs9460939	0.82[EUR][1000 genomes]
rs9466937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9466949	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9466955	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9466956	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9466977	0.82[EUR][1000 genomes]
rs9466978	0.85[EUR][1000 genomes]
rs953377	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs953378	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv3442143	chr6:23686264-23978363	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv883479	chr6:23804221-24090497	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1034848	chr6:23857972-23976276	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv524433	chr6:23858932-23978607	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23870400-23877200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:23873000-23876400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:23873600-23881800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:23876000-23877000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:23876200-23876600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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