Variant report

Variant	rs9460939
Chromosome Location	chr6:23906027-23906028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11756885	0.84[EUR][1000 genomes]
rs1355459	0.84[EUR][1000 genomes]
rs17299436	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17299457	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2036886	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2036887	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2036888	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2036889	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2221824	0.82[EUR][1000 genomes]
rs4327688	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58398055	0.84[EUR][1000 genomes]
rs6900723	0.82[EUR][1000 genomes]
rs6908183	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6921319	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7741044	0.85[EUR][1000 genomes]
rs7752738	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9466937	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9466949	0.84[EUR][1000 genomes]
rs9466955	0.84[EUR][1000 genomes]
rs9466956	0.85[EUR][1000 genomes]
rs9466977	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9466978	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs953377	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs953378	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv3442143	chr6:23686264-23978363	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv883479	chr6:23804221-24090497	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1034848	chr6:23857972-23976276	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv524433	chr6:23858932-23978607	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv2763541	chr6:23887115-23946559	Enhancers Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv470804	chr6:23890877-23946867	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv33446	chr6:23891311-23916811	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
9	nsv981358	chr6:23893475-23909386	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
10	nsv462658	chr6:23905239-23929237	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv601143	chr6:23905239-23929237	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23904600-23906200	Enhancers	Primary hematopoietic stem cells	blood
2	chr6:23904800-23906400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:23905800-23906200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:23905800-23906200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr6:23905800-23906200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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