Variant report
| Variant | rs9466937 |
|---|---|
| Chromosome Location | chr6:23858932-23858933 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11756885 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1355458 | 0.84[EUR][1000 genomes] |
| rs1355459 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs17299436 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs17299457 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2036886 | 0.87[EUR][1000 genomes] |
| rs2036887 | 0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2036888 | 0.87[EUR][1000 genomes] |
| rs2036889 | 0.87[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2221824 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4327688 | 0.87[EUR][1000 genomes] |
| rs58398055 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6900723 | 0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6908183 | 0.91[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6921319 | 0.90[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs7741044 | 0.95[EUR][1000 genomes] |
| rs7752738 | 0.84[EUR][1000 genomes] |
| rs9460939 | 0.81[EUR][1000 genomes] |
| rs9466949 | 0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9466955 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9466956 | 0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs9466977 | 0.81[EUR][1000 genomes] |
| rs953377 | 0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs953378 | 0.87[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1029930 | chr6:23481989-24289948 | Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | esv3442143 | chr6:23686264-23978363 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv883479 | chr6:23804221-24090497 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv1034848 | chr6:23857972-23976276 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv524433 | chr6:23858932-23978607 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs9466937 | BTN3A2 | cis | parietal | SCAN |
| rs9466937 | BTN3A1 | cis | parietal | SCAN |
Chromatin state (count:0 , 50 per page) page:
| No data |
