Variant report

Variant	rs7741044
Chromosome Location	chr6:23871293-23871294
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11756885	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1355458	0.89[EUR][1000 genomes]
rs1355459	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17299436	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17299457	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2036886	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2036887	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2036888	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2036889	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2221824	0.95[EUR][1000 genomes]
rs4327688	0.91[EUR][1000 genomes]
rs58398055	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6900723	0.95[EUR][1000 genomes]
rs6908183	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6921319	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7752738	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9460939	0.85[EUR][1000 genomes]
rs9466937	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9466949	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9466955	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9466956	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9466977	0.85[EUR][1000 genomes]
rs9466978	0.82[EUR][1000 genomes]
rs953377	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs953378	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029930	chr6:23481989-24289948	Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv3442143	chr6:23686264-23978363	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv883479	chr6:23804221-24090497	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1034848	chr6:23857972-23976276	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv524433	chr6:23858932-23978607	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3439931	chr6:23870273-23874471	Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:23870400-23877200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:23870600-23871400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:23870600-23872200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:23871200-23872200	Weak transcription	Fetal Brain Male	brain
5	chr6:23871200-23873600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:23871200-23874600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:23871200-23874800	Weak transcription	Brain Germinal Matrix	brain

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