Variant report

Variant	rs6910363
Chromosome Location	chr6:11809367-11809368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1014972	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16871833	0.92[ASN][1000 genomes]
rs1883324	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1883325	0.93[ASN][1000 genomes]
rs2179742	0.94[EUR][1000 genomes]
rs3950186	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6914007	0.93[ASN][1000 genomes]
rs6936286	0.93[EUR][1000 genomes]
rs6941812	0.93[ASN][1000 genomes]
rs6942235	0.93[ASN][1000 genomes]
rs7739256	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7743245	0.93[ASN][1000 genomes]
rs7766152	0.97[EUR][1000 genomes]
rs9470184	0.94[EUR][1000 genomes]
rs9470216	0.83[EUR][1000 genomes]
rs978565	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11796400-11810400	Weak transcription	Placenta	Placenta
2	chr6:11799200-11809800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:11803800-11809600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:11805000-11809800	Weak transcription	Fetal Lung	lung
5	chr6:11805000-11809800	Weak transcription	Osteobl	bone
6	chr6:11805000-11810400	Weak transcription	Right Atrium	heart
7	chr6:11805200-11810200	Weak transcription	NH-A	brain
8	chr6:11805400-11809800	Weak transcription	HSMMtube	muscle
9	chr6:11805400-11810200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:11805800-11809800	Weak transcription	Stomach Mucosa	stomach
11	chr6:11806400-11809600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr6:11806400-11809800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr6:11806400-11809800	Weak transcription	Fetal Intestine Small	intestine
14	chr6:11806400-11810600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr6:11806600-11809800	Weak transcription	Colonic Mucosa	Colon
16	chr6:11806600-11810200	Weak transcription	K562	blood
17	chr6:11807000-11809800	Weak transcription	NHDF-Ad	bronchial
18	chr6:11807000-11810200	Weak transcription	Fetal Intestine Large	intestine
19	chr6:11807000-11810200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr6:11807200-11811000	Weak transcription	Lung	lung
21	chr6:11807400-11809800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:11807400-11810000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:11807400-11810200	Weak transcription	Fetal Muscle Trunk	muscle
24	chr6:11807400-11810400	Weak transcription	Spleen	Spleen
25	chr6:11807600-11809400	Weak transcription	NHEK	skin
26	chr6:11807600-11809800	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr6:11807600-11810400	Weak transcription	Esophagus	oesophagus
28	chr6:11807600-11810400	Weak transcription	GM12878-XiMat	blood
29	chr6:11807600-11816400	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr6:11808000-11809400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:11808000-11814400	Weak transcription	Fetal Thymus	thymus
32	chr6:11808400-11809400	Weak transcription	HMEC	breast
33	chr6:11808400-11809800	Weak transcription	Ovary	ovary
34	chr6:11808800-11809800	Weak transcription	Fetal Heart	heart
35	chr6:11809200-11809400	Enhancers	H9 Cell Line	embryonic stem cell
36	chr6:11809200-11809400	Enhancers	Fetal Brain Male	brain
37	chr6:11809200-11810200	Enhancers	Hela-S3	cervix
38	chr6:11809200-11811400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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