Variant report

Variant	rs2179742
Chromosome Location	chr6:11826371-11826372
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11819988..11821690-chr6:11826258..11828403,2	K562	blood:
2	chr6:11826093..11827726-chr6:12008345..12010505,2	K562	blood:
3	chr6:11823013..11827016-chr6:11827380..11831004,5	K562	blood:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1014972	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10947579	0.88[CEU][hapmap];0.81[ASN][1000 genomes]
rs1569731	0.92[ASN][1000 genomes]
rs1569732	0.81[ASN][1000 genomes]
rs1569734	0.81[ASN][1000 genomes]
rs1569735	0.95[ASN][1000 genomes]
rs16871833	0.90[CEU][hapmap]
rs1883324	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1883325	0.90[CEU][hapmap]
rs1883326	0.94[CEU][hapmap]
rs2143715	0.94[CEU][hapmap];0.82[ASN][1000 genomes]
rs3950186	1.00[CEU][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4308554	0.84[CEU][hapmap];0.93[ASN][1000 genomes]
rs4310046	0.93[ASN][1000 genomes]
rs4404760	0.94[CEU][hapmap]
rs4557506	0.93[ASN][1000 genomes]
rs4634440	0.95[ASN][1000 genomes]
rs6899747	0.94[ASN][1000 genomes]
rs6910363	0.94[EUR][1000 genomes]
rs6936286	0.95[CEU][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6941812	0.89[CEU][hapmap]
rs6942235	0.89[CEU][hapmap]
rs7739256	1.00[CEU][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7743245	0.94[CEU][hapmap]
rs7766152	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9470184	0.95[CEU][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9470216	0.86[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs978565	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11823000-11827600	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:11823600-11831800	Weak transcription	Spleen	Spleen
3	chr6:11826200-11826400	Enhancers	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links