Variant report

Variant	rs1883326
Chromosome Location	chr6:11818316-11818317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11817454..11819333-chr6:12010113..12012925,2	K562	blood:
2	chr6:11817460..11820356-chr6:11831613..11834346,2	K562	blood:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1014972	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10947579	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13194405	0.86[ASN][1000 genomes]
rs1569731	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1569732	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1569734	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1569735	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16871833	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs1883324	0.95[CEU][hapmap]
rs1883325	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs2143715	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2179742	0.94[CEU][hapmap]
rs35325311	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3950186	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs4308554	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4310046	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4404760	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4557506	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4634440	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66805427	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6899747	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6914007	0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6936286	0.90[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap]
rs6941812	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs6942235	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs7739256	0.95[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.81[TSI][hapmap]
rs7743245	0.91[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs9470184	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs9470216	0.82[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs978565	0.94[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11815600-11822600	Weak transcription	Pancreas	Pancrea
2	chr6:11816400-11821200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:11817800-11819000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr6:11818000-11818400	Enhancers	K562	blood
5	chr6:11818000-11818800	Enhancers	Fetal Thymus	thymus
6	chr6:11818000-11819000	Enhancers	NHEK	skin
7	chr6:11818200-11819000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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