Variant report

Variant	rs2143715
Chromosome Location	chr6:11826208-11826209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11826093..11827726-chr6:12008345..12010505,2	K562	blood:
2	chr6:11823013..11827016-chr6:11827380..11831004,5	K562	blood:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1014972	0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs10947579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13194405	0.86[ASN][1000 genomes]
rs1569731	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1569732	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1569734	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1569735	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16871833	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1883324	0.95[CEU][hapmap];0.83[CHB][hapmap];0.85[CHD][hapmap]
rs1883325	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[EUR][1000 genomes]
rs1883326	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2179742	0.94[CEU][hapmap];0.82[ASN][1000 genomes]
rs35325311	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3950186	0.95[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap]
rs4308554	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4310046	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4404760	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4557506	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4634440	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66805427	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6899747	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6914007	0.93[EUR][1000 genomes]
rs6936286	0.90[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs6941812	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[EUR][1000 genomes]
rs6942235	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[EUR][1000 genomes]
rs7739256	0.95[CEU][hapmap];0.95[CHB][hapmap];0.80[CHD][hapmap];0.95[JPT][hapmap];0.81[TSI][hapmap]
rs7743245	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.94[EUR][1000 genomes]
rs9296163	0.83[LWK][hapmap];1.00[YRI][hapmap]
rs9470184	0.90[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap]
rs9470216	0.82[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs978565	0.94[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2143715	FAM81A	trans	brain	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11823000-11827600	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:11823600-11831800	Weak transcription	Spleen	Spleen
3	chr6:11826200-11826400	Enhancers	GM12878-XiMat	blood

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