Variant report

Variant	rs7743245
Chromosome Location	chr6:11808064-11808065
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11767330..11770016-chr6:11806756..11808382,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111863	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1014972	0.85[CEU][hapmap];0.81[CHB][hapmap]
rs10947579	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1569731	0.94[EUR][1000 genomes]
rs1569732	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1569734	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1569735	0.94[EUR][1000 genomes]
rs16871833	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1883324	0.95[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.81[TSI][hapmap];0.95[ASN][1000 genomes]
rs1883325	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1883326	0.91[ASW][hapmap];1.00[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.90[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs2143715	1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.94[EUR][1000 genomes]
rs2179742	0.94[CEU][hapmap]
rs35325311	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs3950186	0.95[CEU][hapmap];0.84[CHD][hapmap]
rs4308554	0.95[CEU][hapmap];0.82[CHB][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4310046	0.94[EUR][1000 genomes]
rs4404760	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.94[EUR][1000 genomes]
rs4557506	0.94[EUR][1000 genomes]
rs4634440	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66805427	0.94[EUR][1000 genomes]
rs6899747	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6910363	0.93[ASN][1000 genomes]
rs6914007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6936286	0.90[CEU][hapmap];0.83[CHB][hapmap]
rs6941812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6942235	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7739256	0.95[CEU][hapmap]
rs9368892	0.81[CHB][hapmap];0.95[JPT][hapmap]
rs9470184	0.90[CEU][hapmap];0.84[CHD][hapmap]
rs9470216	0.82[CEU][hapmap];0.83[CHB][hapmap]
rs978565	0.94[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11796400-11810400	Weak transcription	Placenta	Placenta
2	chr6:11799200-11809800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:11802800-11809200	Weak transcription	Hela-S3	cervix
4	chr6:11803800-11809600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:11805000-11809800	Weak transcription	Fetal Lung	lung
6	chr6:11805000-11809800	Weak transcription	Osteobl	bone
7	chr6:11805000-11810400	Weak transcription	Right Atrium	heart
8	chr6:11805200-11810200	Weak transcription	NH-A	brain
9	chr6:11805400-11809800	Weak transcription	HSMMtube	muscle
10	chr6:11805400-11810200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:11805800-11809800	Weak transcription	Stomach Mucosa	stomach
12	chr6:11806200-11808200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr6:11806200-11808600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr6:11806400-11809600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:11806400-11809800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr6:11806400-11809800	Weak transcription	Fetal Intestine Small	intestine
17	chr6:11806400-11810600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr6:11806600-11809800	Weak transcription	Colonic Mucosa	Colon
19	chr6:11806600-11810200	Weak transcription	K562	blood
20	chr6:11807000-11809800	Weak transcription	NHDF-Ad	bronchial
21	chr6:11807000-11810200	Weak transcription	Fetal Intestine Large	intestine
22	chr6:11807000-11810200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr6:11807200-11811000	Weak transcription	Lung	lung
24	chr6:11807400-11808200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:11807400-11809800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:11807400-11810000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:11807400-11810200	Weak transcription	Fetal Muscle Trunk	muscle
28	chr6:11807400-11810400	Weak transcription	Spleen	Spleen
29	chr6:11807600-11808400	Enhancers	HMEC	breast
30	chr6:11807600-11809400	Weak transcription	NHEK	skin
31	chr6:11807600-11809800	Weak transcription	Cortex derived primary cultured neurospheres	brain
32	chr6:11807600-11810400	Weak transcription	Esophagus	oesophagus
33	chr6:11807600-11810400	Weak transcription	GM12878-XiMat	blood
34	chr6:11807600-11816400	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr6:11808000-11809400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:11808000-11814400	Weak transcription	Fetal Thymus	thymus

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