Variant report

Variant	rs10947579
Chromosome Location	chr6:11811589-11811590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11811052..11812674-chr6:11998297..11999883,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1014972	1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs13194405	0.81[ASN][1000 genomes]
rs1569731	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1569732	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1569734	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1569735	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16871833	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1883324	0.94[CEU][hapmap];0.81[CHB][hapmap]
rs1883325	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1883326	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2143715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2179742	0.88[CEU][hapmap];0.81[ASN][1000 genomes]
rs35325311	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3950186	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs4308554	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4310046	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4404760	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4557506	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4634440	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4711430	0.83[YRI][hapmap]
rs66805427	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6899747	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6914007	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6936286	0.84[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs6941812	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6942235	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7739256	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs7743245	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7766152	0.81[ASN][1000 genomes]
rs9470184	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs9470216	0.90[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs978565	0.88[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11807600-11816400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr6:11808000-11814400	Weak transcription	Fetal Thymus	thymus
3	chr6:11809800-11811600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr6:11809800-11811800	Enhancers	Fetal Muscle Leg	muscle
5	chr6:11809800-11812000	Enhancers	Fetal Lung	lung
6	chr6:11809800-11812000	Enhancers	Stomach Mucosa	stomach
7	chr6:11809800-11812200	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr6:11809800-11812600	Enhancers	Fetal Heart	heart
9	chr6:11810200-11811800	Enhancers	Fetal Muscle Trunk	muscle
10	chr6:11810400-11811600	Enhancers	Brain Cingulate Gyrus	brain
11	chr6:11810400-11811600	Enhancers	Brain Hippocampus Middle	brain
12	chr6:11810400-11811800	Enhancers	Brain Angular Gyrus	brain
13	chr6:11810400-11812000	Enhancers	Fetal Brain Male	brain
14	chr6:11810600-11812200	Enhancers	Brain Germinal Matrix	brain
15	chr6:11810600-11814000	Weak transcription	Fetal Intestine Small	intestine
16	chr6:11810800-11813400	Weak transcription	Fetal Intestine Large	intestine
17	chr6:11810800-11814800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:11810800-11815000	Weak transcription	NHEK	skin
19	chr6:11810800-11815200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr6:11810800-11815400	Weak transcription	Fetal Stomach	stomach
21	chr6:11810800-11815600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr6:11811000-11811600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr6:11811000-11811600	Enhancers	Hela-S3	cervix
24	chr6:11811000-11811600	Enhancers	Osteobl	bone
25	chr6:11811000-11814400	Weak transcription	Duodenum Mucosa	Duodenum
26	chr6:11811000-11814400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr6:11811200-11811600	Active TSS	Fetal Brain Female	brain
28	chr6:11811200-11812000	Weak transcription	GM12878-XiMat	blood
29	chr6:11811200-11815000	Weak transcription	HMEC	breast
30	chr6:11811200-11815200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr6:11811200-11815400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:11811200-11815400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:11811200-11815400	Weak transcription	Pancreas	Pancrea
34	chr6:11811200-11815400	Weak transcription	NH-A	brain
35	chr6:11811200-11815400	Weak transcription	NHDF-Ad	bronchial
36	chr6:11811400-11811600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr6:11811400-11811600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:11811400-11811800	Enhancers	Brain Anterior Caudate	brain
39	chr6:11811400-11811800	Enhancers	HSMMtube	muscle
40	chr6:11811400-11812800	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr6:11811400-11813000	Weak transcription	Stomach Smooth Muscle	stomach
42	chr6:11811400-11814000	Weak transcription	Adipose Nuclei	Adipose
43	chr6:11811400-11814400	Weak transcription	A549	lung
44	chr6:11811400-11815200	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr6:11811400-11815200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:11811400-11815400	Weak transcription	HSMM	muscle

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