Variant report

Variant	rs9470184
Chromosome Location	chr6:11814975-11814976
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11810352..11813130-chr6:11814458..11816806,2	K562	blood:
2	chr6:11809930..11813130-chr6:11813713..11816806,3	K562	blood:

Variant related genes	Relation type
ENSG00000234427	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1014972	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10947579	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs1569731	0.88[ASN][1000 genomes]
rs1569735	0.89[ASN][1000 genomes]
rs16871833	0.90[CEU][hapmap]
rs1883324	0.95[CEU][hapmap];0.81[CHD][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.94[EUR][1000 genomes]
rs1883325	0.90[CEU][hapmap]
rs1883326	0.90[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2143715	0.90[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap]
rs2179742	0.95[CEU][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3950186	1.00[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];0.96[MEX][hapmap];1.00[MKK][hapmap];0.91[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4308554	0.86[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs4310046	0.88[ASN][1000 genomes]
rs4404760	0.90[CEU][hapmap];0.95[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs4557506	0.88[ASN][1000 genomes]
rs4634440	0.89[ASN][1000 genomes]
rs6899747	0.90[ASN][1000 genomes]
rs6910363	0.94[EUR][1000 genomes]
rs6936286	0.90[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6941812	0.90[CEU][hapmap]
rs6942235	0.90[CEU][hapmap]
rs7739256	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7743245	0.90[CEU][hapmap];0.84[CHD][hapmap]
rs7766152	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9470216	0.82[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs978565	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11807600-11816400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr6:11810800-11815000	Weak transcription	NHEK	skin
3	chr6:11810800-11815200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:11810800-11815400	Weak transcription	Fetal Stomach	stomach
5	chr6:11810800-11815600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr6:11811200-11815000	Weak transcription	HMEC	breast
7	chr6:11811200-11815200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:11811200-11815400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr6:11811200-11815400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:11811200-11815400	Weak transcription	Pancreas	Pancrea
11	chr6:11811200-11815400	Weak transcription	NH-A	brain
12	chr6:11811200-11815400	Weak transcription	NHDF-Ad	bronchial
13	chr6:11811400-11815200	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr6:11811400-11815200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:11811400-11815400	Weak transcription	HSMM	muscle
16	chr6:11811600-11815400	Weak transcription	Osteobl	bone
17	chr6:11812000-11815800	Enhancers	GM12878-XiMat	blood
18	chr6:11813000-11815200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:11813400-11816400	Enhancers	Fetal Intestine Large	intestine
20	chr6:11813600-11815000	Weak transcription	HSMMtube	muscle
21	chr6:11813800-11815400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr6:11814000-11815000	Enhancers	Adipose Nuclei	Adipose
23	chr6:11814000-11816400	Enhancers	Fetal Intestine Small	intestine
24	chr6:11814200-11815200	Weak transcription	Hela-S3	cervix
25	chr6:11814200-11816400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:11814400-11815000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr6:11814400-11815000	Enhancers	Fetal Thymus	thymus
28	chr6:11814400-11815000	Enhancers	Stomach Mucosa	stomach
29	chr6:11814400-11815000	Enhancers	A549	lung
30	chr6:11814400-11815800	Enhancers	Duodenum Mucosa	Duodenum
31	chr6:11814800-11816200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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