Variant report

Variant	rs6936286
Chromosome Location	chr6:11827597-11827598
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11819988..11821690-chr6:11826258..11828403,2	K562	blood:
2	chr6:11823013..11825643-chr6:11827380..11829365,3	K562	blood:
3	chr6:11823013..11827016-chr6:11827380..11831004,5	K562	blood:
4	chr6:11826093..11827726-chr6:12008345..12010505,2	K562	blood:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1014972	0.91[CHB][hapmap];0.90[JPT][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10947579	0.84[CEU][hapmap];0.90[CHB][hapmap];0.85[JPT][hapmap]
rs1569731	0.90[ASN][1000 genomes]
rs1569735	0.91[ASN][1000 genomes]
rs16871833	0.86[CEU][hapmap]
rs1883324	0.95[CEU][hapmap];0.83[CHB][hapmap];0.92[EUR][1000 genomes]
rs1883325	0.86[CEU][hapmap]
rs1883326	0.90[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap]
rs2143715	0.90[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2179742	0.95[CEU][hapmap];0.89[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3950186	0.95[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4308554	0.91[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs4310046	0.89[ASN][1000 genomes]
rs4404760	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs4557506	0.89[ASN][1000 genomes]
rs4634440	0.91[ASN][1000 genomes]
rs66805427	0.81[ASN][1000 genomes]
rs6899747	0.91[ASN][1000 genomes]
rs6910363	0.93[EUR][1000 genomes]
rs6941812	0.86[CEU][hapmap]
rs6942235	0.86[CEU][hapmap]
rs7739256	0.95[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7743245	0.90[CEU][hapmap];0.83[CHB][hapmap]
rs7766152	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470184	0.90[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9470216	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs978565	0.95[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.83[YRI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11823000-11827600	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:11823600-11831800	Weak transcription	Spleen	Spleen
3	chr6:11826800-11828000	ZNF genes & repeats	GM12878-XiMat	blood
4	chr6:11826800-11829000	Weak transcription	Pancreas	Pancrea
5	chr6:11827200-11827600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:11827200-11827800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:11827400-11827800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:11827400-11827800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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