Variant report

Variant	rs4404760
Chromosome Location	chr6:11826714-11826715
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11819988..11821690-chr6:11826258..11828403,2	K562	blood:
2	chr6:11826093..11827726-chr6:12008345..12010505,2	K562	blood:
3	chr6:11823013..11827016-chr6:11827380..11831004,5	K562	blood:

Variant related genes	Relation type
ENSG00000095951	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1014972	0.85[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10947579	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13194405	0.88[ASN][1000 genomes]
rs1569731	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1569732	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1569734	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1569735	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16871833	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs1883324	0.95[CEU][hapmap];0.83[CHB][hapmap];0.82[CHD][hapmap]
rs1883325	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[EUR][1000 genomes]
rs1883326	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2143715	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2179742	0.94[CEU][hapmap]
rs35325311	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3950186	0.95[CEU][hapmap];0.95[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs4308554	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4310046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4557506	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4634440	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs66805427	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6899747	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6914007	0.93[EUR][1000 genomes]
rs6936286	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs6941812	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[EUR][1000 genomes]
rs6942235	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[EUR][1000 genomes]
rs7739256	0.95[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[TSI][hapmap]
rs7743245	1.00[CEU][hapmap];0.83[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];0.97[TSI][hapmap];0.94[EUR][1000 genomes]
rs9470184	0.90[CEU][hapmap];0.95[CHB][hapmap];0.82[CHD][hapmap];0.90[JPT][hapmap]
rs9470216	0.82[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs978565	0.94[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11823000-11827600	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:11823600-11831800	Weak transcription	Spleen	Spleen
3	chr6:11826400-11826800	Weak transcription	GM12878-XiMat	blood

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