Variant report

Variant	rs6916294
Chromosome Location	chr6:128875198-128875199
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs11154440	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs11753496	0.94[EUR][1000 genomes]
rs11758690	0.94[EUR][1000 genomes]
rs12524679	0.87[EUR][1000 genomes]
rs12525214	0.92[EUR][1000 genomes]
rs12526634	0.96[EUR][1000 genomes]
rs12527086	0.86[CEU][hapmap];0.96[EUR][1000 genomes]
rs12527265	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs12529229	0.87[EUR][1000 genomes]
rs12529511	0.94[EUR][1000 genomes]
rs12529947	0.87[EUR][1000 genomes]
rs12529948	0.94[EUR][1000 genomes]
rs1341584	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1341585	0.86[CEU][hapmap];0.92[EUR][1000 genomes]
rs1341588	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1417895	1.00[CHB][hapmap]
rs1417896	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1572964	0.93[CEU][hapmap];0.87[EUR][1000 genomes]
rs17055938	1.00[CHB][hapmap]
rs17056043	0.92[EUR][1000 genomes]
rs17461759	0.86[CEU][hapmap]
rs2144376	1.00[CEU][hapmap]
rs62426796	0.85[EUR][1000 genomes]
rs62426798	0.88[EUR][1000 genomes]
rs62426801	0.94[EUR][1000 genomes]
rs62426804	0.96[EUR][1000 genomes]
rs62426805	0.96[EUR][1000 genomes]
rs62426806	0.96[EUR][1000 genomes]
rs62426840	0.96[EUR][1000 genomes]
rs62426841	0.96[EUR][1000 genomes]
rs62426842	0.96[EUR][1000 genomes]
rs62426844	0.96[EUR][1000 genomes]
rs62426845	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62426846	0.92[EUR][1000 genomes]
rs62426847	0.92[EUR][1000 genomes]
rs62426848	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62426849	0.84[EUR][1000 genomes]
rs62426850	0.84[EUR][1000 genomes]
rs62427780	0.81[EUR][1000 genomes]
rs6569535	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6569536	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6920943	1.00[CHB][hapmap]
rs6923822	1.00[CHB][hapmap]
rs6935611	1.00[CHB][hapmap]
rs714782	0.81[EUR][1000 genomes]
rs717617	0.87[CEU][hapmap]
rs7356823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7454742	0.92[EUR][1000 genomes]
rs7738739	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7751094	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7751265	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7754729	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7760287	0.96[EUR][1000 genomes]
rs7760330	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7760572	0.96[EUR][1000 genomes]
rs7760682	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7768240	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs9321121	1.00[CHB][hapmap]
rs9375570	1.00[CHB][hapmap]
rs9375572	1.00[CHB][hapmap]
rs9375578	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9385464	1.00[CHB][hapmap]
rs9388638	1.00[CHB][hapmap]
rs9388645	1.00[CHB][hapmap]
rs9388646	1.00[CHB][hapmap]
rs9388647	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9388648	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9388649	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9388650	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9402055	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9402057	1.00[CHB][hapmap]
rs9482902	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9491999	1.00[CHB][hapmap]
rs9492000	0.86[CEU][hapmap];0.96[EUR][1000 genomes]
rs9492001	1.00[CHB][hapmap]
rs9492002	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs9492003	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9492004	0.96[EUR][1000 genomes]
rs9492005	0.96[EUR][1000 genomes]
rs9492008	0.96[EUR][1000 genomes]
rs9492011	0.93[EUR][1000 genomes]
rs9492017	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs9492018	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033443	chr6:128306654-128899203	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv538440	chr6:128306654-128899203	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1020071	chr6:128579774-129048919	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv538441	chr6:128579774-129048919	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv830800	chr6:128710631-128878435	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:128874400-128877200	Weak transcription	Fetal Lung	lung
2	chr6:128875000-128876600	Enhancers	Fetal Heart	heart

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