The 2.0 version of rSNPBase

Variant report

Variant rs17461759
Chromosome Location chr6:128839639-128839640
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:104 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:128817200-128839800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr6:128817200-128839800 Weak transcription Aorta Aorta
3 chr6:128825800-128840000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
4 chr6:128831400-128840000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr6:128831600-128839800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr6:128832800-128839800 Weak transcription Right Ventricle heart
7 chr6:128835000-128840600 Active TSS Fetal Brain Female brain
8 chr6:128835800-128839800 Weak transcription Small Intestine intestine
9 chr6:128837000-128840000 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
10 chr6:128837200-128839800 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
11 chr6:128837200-128842800 Active TSS Brain Inferior Temporal Lobe brain
12 chr6:128837600-128839800 Weak transcription Psoas Muscle Psoas
13 chr6:128837600-128840000 Active TSS Duodenum Smooth Muscle Duodenum
14 chr6:128838000-128839800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
15 chr6:128838200-128842400 Active TSS Brain Cingulate Gyrus brain
16 chr6:128838400-128839800 Weak transcription Lung lung
17 chr6:128838400-128842200 Active TSS Duodenum Mucosa Duodenum
18 chr6:128838400-128843000 Active TSS Fetal Brain Male brain
19 chr6:128838600-128839800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
20 chr6:128838600-128842200 Active TSS HMEC breast
21 chr6:128838600-128842400 Active TSS Fetal Intestine Small intestine
22 chr6:128838600-128842600 Active TSS Brain Hippocampus Middle brain
23 chr6:128838600-128842600 Active TSS Fetal Intestine Large intestine
24 chr6:128838600-128842800 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
25 chr6:128838600-128842800 Active TSS Brain Angular Gyrus brain
26 chr6:128838800-128840400 Flanking Active TSS HUVEC blood vessel
27 chr6:128838800-128842400 Active TSS Rectal Mucosa Donor 29 rectum
28 chr6:128838800-128842600 Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
29 chr6:128838800-128842800 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
30 chr6:128838800-128842800 Active TSS Stomach Smooth Muscle stomach
31 chr6:128839000-128841000 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
32 chr6:128839000-128842400 Active TSS NH-A brain
33 chr6:128839200-128840000 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
34 chr6:128839200-128840000 Flanking Active TSS Osteobl bone
35 chr6:128839200-128840200 Flanking Active TSS HUES48 Cell Line embryonic stem cell
36 chr6:128839200-128842800 Active TSS Right Atrium heart
37 chr6:128839400-128839800 Flanking Active TSS H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr6:128839400-128839800 Active TSS HUES64 Cell Line embryonic stem cell
39 chr6:128839400-128839800 Flanking Active TSS Breast Myoepithelial Primary Cells Breast
40 chr6:128839400-128840000 Flanking Bivalent TSS/Enh Primary T cells from cord blood blood
41 chr6:128839400-128840400 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
42 chr6:128839400-128840400 Flanking Active TSS Liver Liver
43 chr6:128839400-128841000 Active TSS Pancreatic Islets Pancreatic Islet
44 chr6:128839400-128842000 Active TSS Fetal Thymus thymus
45 chr6:128839400-128842200 Active TSS Brain Dorsolateral Prefrontal Cortex brain
46 chr6:128839400-128842600 Active TSS ES-I3 Cell Line embryonic stem cell
47 chr6:128839400-128842600 Active TSS HUES6 Cell Line embryonic stem cell
48 chr6:128839400-128842600 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
49 chr6:128839400-128842600 Active TSS Brain Anterior Caudate brain
50 chr6:128839400-128842600 Active TSS Colonic Mucosa Colon

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Last update: Aug 31, 2015