The 2.0 version of rSNPBase

Variant report

Variant rs62426792
Chromosome Location chr6:128840684-128840685
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:125 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:128837200-128842800 Active TSS Brain Inferior Temporal Lobe brain
2 chr6:128838200-128842400 Active TSS Brain Cingulate Gyrus brain
3 chr6:128838400-128842200 Active TSS Duodenum Mucosa Duodenum
4 chr6:128838400-128843000 Active TSS Fetal Brain Male brain
5 chr6:128838600-128842200 Active TSS HMEC breast
6 chr6:128838600-128842400 Active TSS Fetal Intestine Small intestine
7 chr6:128838600-128842600 Active TSS Brain Hippocampus Middle brain
8 chr6:128838600-128842600 Active TSS Fetal Intestine Large intestine
9 chr6:128838600-128842800 Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
10 chr6:128838600-128842800 Active TSS Brain Angular Gyrus brain
11 chr6:128838800-128842400 Active TSS Rectal Mucosa Donor 29 rectum
12 chr6:128838800-128842600 Active TSS Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr6:128838800-128842800 Active TSS IMR90 fetal lung fibroblasts Cell Line lung
14 chr6:128838800-128842800 Active TSS Stomach Smooth Muscle stomach
15 chr6:128839000-128841000 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr6:128839000-128842400 Active TSS NH-A brain
17 chr6:128839200-128842800 Active TSS Right Atrium heart
18 chr6:128839400-128841000 Active TSS Pancreatic Islets Pancreatic Islet
19 chr6:128839400-128842000 Active TSS Fetal Thymus thymus
20 chr6:128839400-128842200 Active TSS Brain Dorsolateral Prefrontal Cortex brain
21 chr6:128839400-128842600 Active TSS ES-I3 Cell Line embryonic stem cell
22 chr6:128839400-128842600 Active TSS HUES6 Cell Line embryonic stem cell
23 chr6:128839400-128842600 Active TSS Ganglion Eminence derived primary cultured neurospheres brain
24 chr6:128839400-128842600 Active TSS Brain Anterior Caudate brain
25 chr6:128839400-128842600 Active TSS Colonic Mucosa Colon
26 chr6:128839400-128842600 Active TSS Fetal Heart heart
27 chr6:128839400-128842600 Active TSS Rectal Mucosa Donor 31 rectum
28 chr6:128839400-128842600 Active TSS NHDF-Ad bronchial
29 chr6:128839400-128842800 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
30 chr6:128839400-128842800 Active TSS HSMMtube muscle
31 chr6:128839600-128840800 Active TSS Fetal Stomach stomach
32 chr6:128839600-128840800 Active TSS Stomach Mucosa stomach
33 chr6:128839600-128841000 Flanking Bivalent TSS/Enh Primary T helper cells PMA-I stimulated --
34 chr6:128839600-128841200 Flanking Bivalent TSS/Enh Brain Germinal Matrix brain
35 chr6:128839600-128842200 Active TSS Gastric stomach
36 chr6:128839600-128842400 Active TSS Colon Smooth Muscle Colon
37 chr6:128839600-128842400 Active TSS Ovary ovary
38 chr6:128839600-128842400 Active TSS Sigmoid Colon Sigmoid Colon
39 chr6:128839600-128842400 Bivalent/Poised TSS HepG2 liver
40 chr6:128839600-128842400 Active TSS NHEK skin
41 chr6:128839600-128842600 Active TSS Left Ventricle heart
42 chr6:128839600-128842600 Active TSS Pancreas Pancrea
43 chr6:128839600-128842600 Active TSS Rectal Smooth Muscle rectum
44 chr6:128839600-128842600 Active TSS A549 lung
45 chr6:128839600-128842600 Active TSS NHLF lung
46 chr6:128839800-128840800 Flanking Bivalent TSS/Enh Primary T killer memory cells from peripheral blood blood
47 chr6:128839800-128841200 Flanking Active TSS Adipose Nuclei Adipose
48 chr6:128839800-128841400 Flanking Active TSS Cortex derived primary cultured neurospheres brain
49 chr6:128839800-128841600 Flanking Bivalent TSS/Enh Primary T helper cells fromperipheralblood blood
50 chr6:128839800-128841800 Flanking Bivalent TSS/Enh Primary hematopoietic stem cells G-CSF-mobilized Male --

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Last update: Aug 31, 2015