Variant report

Variant	rs6920091
Chromosome Location	chr6:164200631-164200632
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:164158813..164160898-chr6:164198628..164201364,2	MCF-7	breast:
2	chr6:164200297..164203061-chr6:164227570..164230293,2	K562	blood:
3	chr6:164188709..164190897-chr6:164199271..164201440,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs55683496	1.00[AMR][1000 genomes]
rs56029215	0.89[AFR][1000 genomes]
rs58250488	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59109163	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59173227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59348084	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60334591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60518924	0.83[AFR][1000 genomes]
rs73246937	1.00[AMR][1000 genomes]
rs73784840	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784842	0.90[AFR][1000 genomes]
rs73784844	0.90[AFR][1000 genomes]
rs73784855	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73784862	0.85[AFR][1000 genomes]
rs73786555	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018860	chr6:163939347-164532579	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538526	chr6:163939347-164532579	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv1026707	chr6:164188210-164749206	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv538527	chr6:164188210-164749206	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv981090	chr6:164200192-164201240	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:164186200-164203600	Weak transcription	Right Atrium	heart
2	chr6:164197200-164204400	Enhancers	Fetal Muscle Leg	muscle
3	chr6:164197600-164201400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr6:164197600-164201800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr6:164198400-164201600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:164198600-164201600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:164199400-164201600	Weak transcription	Fetal Stomach	stomach
8	chr6:164199400-164203600	Weak transcription	Left Ventricle	heart
9	chr6:164199400-164203600	Weak transcription	Right Ventricle	heart
10	chr6:164199600-164202000	Enhancers	K562	blood
11	chr6:164199800-164201000	Weak transcription	HSMMtube	muscle
12	chr6:164200200-164200800	Enhancers	Psoas Muscle	Psoas
13	chr6:164200200-164201000	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr6:164200200-164201000	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr6:164200200-164202600	Enhancers	Fetal Heart	heart
16	chr6:164200400-164200800	Enhancers	Esophagus	oesophagus
17	chr6:164200400-164200800	Enhancers	Fetal Muscle Trunk	muscle
18	chr6:164200400-164201200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:164200600-164200800	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr6:164200600-164200800	Enhancers	Brain Anterior Caudate	brain
21	chr6:164200600-164200800	Enhancers	Spleen	Spleen
22	chr6:164200600-164201000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:164200600-164201000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr6:164200600-164202400	Enhancers	Brain Germinal Matrix	brain

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