Variant report

Variant	rs6965039
Chromosome Location	chr7:22218289-22218290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16873147	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17146361	1.00[AMR][1000 genomes]
rs17146373	1.00[AMR][1000 genomes]
rs17150405	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6947617	1.00[AMR][1000 genomes]
rs6964294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7794194	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7794633	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7798647	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606405	chr7:22202485-22235825	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22184600-22240600	Weak transcription	Colonic Mucosa	Colon
2	chr7:22190000-22232800	Weak transcription	Aorta	Aorta
3	chr7:22193800-22232000	Weak transcription	Adipose Nuclei	Adipose
4	chr7:22194200-22223200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:22194400-22219400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:22194400-22227200	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr7:22194400-22232400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:22194600-22221200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:22198000-22223600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr7:22199800-22219600	Weak transcription	Left Ventricle	heart
11	chr7:22207000-22232000	Weak transcription	Fetal Stomach	stomach
12	chr7:22209000-22220000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr7:22212600-22220400	Strong transcription	HepG2	liver
14	chr7:22214400-22247400	Weak transcription	HUVEC	blood vessel
15	chr7:22214600-22232000	Weak transcription	Small Intestine	intestine
16	chr7:22214600-22232400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr7:22214800-22232600	Weak transcription	NHEK	skin
18	chr7:22215000-22221400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr7:22215000-22226600	Weak transcription	Esophagus	oesophagus
20	chr7:22215400-22232000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr7:22215600-22218600	Strong transcription	Lung	lung
22	chr7:22215600-22223600	Strong transcription	Fetal Thymus	thymus
23	chr7:22216200-22218600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr7:22216600-22218400	Genic enhancers	Brain Angular Gyrus	brain
25	chr7:22216600-22218600	Genic enhancers	Brain Substantia Nigra	brain
26	chr7:22216800-22218400	Strong transcription	Primary B cells from cord blood	blood
27	chr7:22216800-22218400	Strong transcription	Spleen	Spleen
28	chr7:22216800-22218600	Strong transcription	Rectal Mucosa Donor 31	rectum
29	chr7:22217000-22218400	Strong transcription	Fetal Intestine Large	intestine
30	chr7:22217000-22221400	Weak transcription	Fetal Brain Male	brain
31	chr7:22217400-22218600	Enhancers	Brain Inferior Temporal Lobe	brain
32	chr7:22217400-22219000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr7:22217400-22220200	Weak transcription	Brain Anterior Caudate	brain
34	chr7:22217400-22229000	Weak transcription	Pancreas	Pancrea
35	chr7:22217600-22218600	Strong transcription	Fetal Intestine Small	intestine
36	chr7:22217800-22218400	Strong transcription	Brain Hippocampus Middle	brain
37	chr7:22217800-22218800	Strong transcription	Thymus	Thymus
38	chr7:22218000-22218400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr7:22218000-22218600	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr7:22218000-22218600	Enhancers	iPS-18 Cell Line	embryonic stem cell
41	chr7:22218200-22218400	Genic enhancers	H1 Cell Line	embryonic stem cell
42	chr7:22218200-22218400	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr7:22218200-22218600	Enhancers	Brain Cingulate Gyrus	brain
44	chr7:22218200-22218600	Strong transcription	Duodenum Mucosa	Duodenum
45	chr7:22218200-22219000	Strong transcription	Dnd41	blood
46	chr7:22218200-22220000	Weak transcription	Liver	Liver

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