Variant report

Variant	rs17146373
Chromosome Location	chr7:22226963-22226964
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:22224897..22227300-chr7:22243632..22245508,2	K562	blood:
2	chr7:22226022..22228135-chr7:22235562..22238353,2	MCF-7	breast:
3	chr7:22223272..22225334-chr7:22226478..22228657,2	MCF-7	breast:
4	chr7:22225325..22228215-chr7:22229043..22231060,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16873143	0.82[ASW][hapmap];1.00[MEX][hapmap]
rs16873147	1.00[AMR][1000 genomes]
rs17146334	0.82[ASW][hapmap];1.00[MEX][hapmap]
rs17146361	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17150405	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6947617	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs6964294	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs6965039	1.00[AMR][1000 genomes]
rs7794194	1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7794633	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7798647	1.00[AMR][1000 genomes]
rs7810806	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606405	chr7:22202485-22235825	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17146373	NQO2	trans	lymphoblastoid	seeQTL

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22184600-22240600	Weak transcription	Colonic Mucosa	Colon
2	chr7:22190000-22232800	Weak transcription	Aorta	Aorta
3	chr7:22193800-22232000	Weak transcription	Adipose Nuclei	Adipose
4	chr7:22194400-22227200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr7:22194400-22232400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:22207000-22232000	Weak transcription	Fetal Stomach	stomach
7	chr7:22214400-22247400	Weak transcription	HUVEC	blood vessel
8	chr7:22214600-22232000	Weak transcription	Small Intestine	intestine
9	chr7:22214600-22232400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr7:22214800-22232600	Weak transcription	NHEK	skin
11	chr7:22215400-22232000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr7:22217400-22229000	Weak transcription	Pancreas	Pancrea
13	chr7:22218400-22227000	Weak transcription	Spleen	Spleen
14	chr7:22218600-22227000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr7:22218600-22227200	Weak transcription	Duodenum Mucosa	Duodenum
16	chr7:22218600-22227200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr7:22218600-22227200	Weak transcription	Lung	lung
18	chr7:22218600-22229000	Weak transcription	Fetal Intestine Small	intestine
19	chr7:22218800-22232000	Weak transcription	Thymus	Thymus
20	chr7:22219600-22234600	Weak transcription	Primary T cells from cord blood	blood
21	chr7:22220200-22229600	Weak transcription	Left Ventricle	heart
22	chr7:22220600-22227200	Weak transcription	Primary B cells from cord blood	blood
23	chr7:22221800-22230200	Weak transcription	Fetal Brain Male	brain
24	chr7:22221800-22232400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr7:22221800-22233200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr7:22222000-22227400	Weak transcription	HepG2	liver
27	chr7:22222000-22229200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr7:22222200-22229000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr7:22222200-22235200	Weak transcription	GM12878-XiMat	blood
30	chr7:22222800-22230200	Weak transcription	Fetal Brain Female	brain
31	chr7:22223200-22232400	Weak transcription	Rectal Smooth Muscle	rectum
32	chr7:22223200-22242600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr7:22223800-22234200	Weak transcription	HMEC	breast
34	chr7:22224000-22232600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr7:22224800-22228600	Weak transcription	Primary hematopoietic stem cells	blood
36	chr7:22224800-22229800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr7:22224800-22232400	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr7:22225200-22227000	Weak transcription	Brain Cingulate Gyrus	brain
39	chr7:22225200-22231200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr7:22225200-22232000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr7:22225200-22233000	Strong transcription	Fetal Thymus	thymus
42	chr7:22225400-22228600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr7:22225400-22228800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr7:22225400-22228800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr7:22225400-22229000	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr7:22225400-22230400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr7:22225400-22253600	Weak transcription	Stomach Mucosa	stomach
48	chr7:22225600-22228600	Weak transcription	HUES64 Cell Line	embryonic stem cell
49	chr7:22225600-22229400	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr7:22225600-22231200	Weak transcription	Fetal Kidney	kidney

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