Variant report

Variant	rs6947617
Chromosome Location	chr7:22221824-22221825
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16873147	1.00[AMR][1000 genomes]
rs17146361	1.00[AMR][1000 genomes]
rs17146373	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs17150405	1.00[AMR][1000 genomes]
rs6964294	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs6965039	1.00[AMR][1000 genomes]
rs7794194	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs7794633	1.00[AMR][1000 genomes]
rs7798647	1.00[AMR][1000 genomes]
rs7810806	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606405	chr7:22202485-22235825	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22184600-22240600	Weak transcription	Colonic Mucosa	Colon
2	chr7:22190000-22232800	Weak transcription	Aorta	Aorta
3	chr7:22193800-22232000	Weak transcription	Adipose Nuclei	Adipose
4	chr7:22194200-22223200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr7:22194400-22227200	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr7:22194400-22232400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:22198000-22223600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr7:22207000-22232000	Weak transcription	Fetal Stomach	stomach
9	chr7:22214400-22247400	Weak transcription	HUVEC	blood vessel
10	chr7:22214600-22232000	Weak transcription	Small Intestine	intestine
11	chr7:22214600-22232400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr7:22214800-22232600	Weak transcription	NHEK	skin
13	chr7:22215000-22226600	Weak transcription	Esophagus	oesophagus
14	chr7:22215400-22232000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr7:22215600-22223600	Strong transcription	Fetal Thymus	thymus
16	chr7:22217400-22229000	Weak transcription	Pancreas	Pancrea
17	chr7:22218400-22226600	Weak transcription	Fetal Intestine Large	intestine
18	chr7:22218400-22227000	Weak transcription	Spleen	Spleen
19	chr7:22218600-22223000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr7:22218600-22227000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr7:22218600-22227200	Weak transcription	Duodenum Mucosa	Duodenum
22	chr7:22218600-22227200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr7:22218600-22227200	Weak transcription	Lung	lung
24	chr7:22218600-22229000	Weak transcription	Fetal Intestine Small	intestine
25	chr7:22218800-22232000	Weak transcription	Thymus	Thymus
26	chr7:22219600-22234600	Weak transcription	Primary T cells from cord blood	blood
27	chr7:22219800-22223800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr7:22220200-22229600	Weak transcription	Left Ventricle	heart
29	chr7:22220400-22222400	Enhancers	Brain Hippocampus Middle	brain
30	chr7:22220400-22224200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr7:22220400-22226600	Weak transcription	Liver	Liver
32	chr7:22220600-22226600	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr7:22220600-22227200	Weak transcription	Primary B cells from cord blood	blood
34	chr7:22221000-22222000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr7:22221000-22222000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr7:22221000-22222800	Enhancers	Fetal Brain Female	brain
37	chr7:22221200-22222000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr7:22221200-22222000	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr7:22221200-22222200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr7:22221400-22222000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr7:22221400-22222000	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chr7:22221400-22222000	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr7:22221400-22222000	Flanking Active TSS	Brain Cingulate Gyrus	brain
44	chr7:22221400-22222000	Enhancers	NHDF-Ad	bronchial
45	chr7:22221400-22222200	Active TSS	Brain Inferior Temporal Lobe	brain
46	chr7:22221600-22222000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr7:22221600-22222000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr7:22221600-22222000	Flanking Active TSS	Brain Angular Gyrus	brain
49	chr7:22221600-22222000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
50	chr7:22221600-22222000	Strong transcription	HepG2	liver

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