Variant report

Variant	rs7794194
Chromosome Location	chr7:22229387-22229388
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:22223577..22226016-chr7:22227692..22230056,2	MCF-7	breast:
2	chr7:22225325..22228215-chr7:22229043..22231060,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16873143	1.00[MEX][hapmap]
rs16873147	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17146334	1.00[MEX][hapmap]
rs17146361	1.00[AMR][1000 genomes]
rs17146373	1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs17150405	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6947617	0.88[YRI][hapmap];1.00[AMR][1000 genomes]
rs6964294	0.88[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6965039	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7794633	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7798647	1.00[AMR][1000 genomes]
rs7810806	0.82[ASW][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv606405	chr7:22202485-22235825	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7794194	NQO2	trans	lymphoblastoid	seeQTL

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:22184600-22240600	Weak transcription	Colonic Mucosa	Colon
2	chr7:22190000-22232800	Weak transcription	Aorta	Aorta
3	chr7:22193800-22232000	Weak transcription	Adipose Nuclei	Adipose
4	chr7:22194400-22232400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:22207000-22232000	Weak transcription	Fetal Stomach	stomach
6	chr7:22214400-22247400	Weak transcription	HUVEC	blood vessel
7	chr7:22214600-22232000	Weak transcription	Small Intestine	intestine
8	chr7:22214600-22232400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr7:22214800-22232600	Weak transcription	NHEK	skin
10	chr7:22215400-22232000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr7:22218800-22232000	Weak transcription	Thymus	Thymus
12	chr7:22219600-22234600	Weak transcription	Primary T cells from cord blood	blood
13	chr7:22220200-22229600	Weak transcription	Left Ventricle	heart
14	chr7:22221800-22230200	Weak transcription	Fetal Brain Male	brain
15	chr7:22221800-22232400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr7:22221800-22233200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr7:22222200-22235200	Weak transcription	GM12878-XiMat	blood
18	chr7:22222800-22230200	Weak transcription	Fetal Brain Female	brain
19	chr7:22223200-22232400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr7:22223200-22242600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr7:22223800-22234200	Weak transcription	HMEC	breast
22	chr7:22224000-22232600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr7:22224800-22229800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr7:22224800-22232400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr7:22225200-22231200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr7:22225200-22232000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr7:22225200-22233000	Strong transcription	Fetal Thymus	thymus
28	chr7:22225400-22230400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr7:22225400-22253600	Weak transcription	Stomach Mucosa	stomach
30	chr7:22225600-22229400	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr7:22225600-22231200	Weak transcription	Fetal Kidney	kidney
32	chr7:22225800-22232000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr7:22225800-22246800	Strong transcription	Dnd41	blood
34	chr7:22226600-22232600	Strong transcription	Fetal Intestine Large	intestine
35	chr7:22227000-22236800	Strong transcription	Rectal Mucosa Donor 31	rectum
36	chr7:22227200-22229400	Strong transcription	Primary B cells from cord blood	blood
37	chr7:22227200-22231200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr7:22227200-22233400	Strong transcription	Lung	lung
39	chr7:22227400-22230200	Weak transcription	Duodenum Mucosa	Duodenum
40	chr7:22227400-22245600	Strong transcription	HepG2	liver
41	chr7:22227600-22230200	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr7:22227600-22231000	Weak transcription	Esophagus	oesophagus
43	chr7:22227600-22232400	Weak transcription	Spleen	Spleen
44	chr7:22228000-22229800	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr7:22228000-22233800	Active TSS	Brain Inferior Temporal Lobe	brain
46	chr7:22228200-22229600	Weak transcription	Liver	Liver
47	chr7:22228400-22229800	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chr7:22228600-22229600	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr7:22228600-22230600	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr7:22228800-22230000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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