Variant report

Variant	rs7014560
Chromosome Location	chr8:130568209-130568210
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10956482	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12548063	0.80[EUR][1000 genomes]
rs1594774	0.80[EUR][1000 genomes]
rs16904119	0.80[EUR][1000 genomes]
rs2043404	0.81[EUR][1000 genomes]
rs4319050	0.80[EUR][1000 genomes]
rs61453473	0.80[EUR][1000 genomes]
rs6470739	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6982553	0.80[EUR][1000 genomes]
rs7000320	0.80[EUR][1000 genomes]
rs7006214	0.80[EUR][1000 genomes]
rs72609887	0.82[EUR][1000 genomes]
rs7829245	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7840067	0.81[EUR][1000 genomes]
rs7846327	0.80[EUR][1000 genomes]
rs892350	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs892351	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9642890	0.81[EUR][1000 genomes]

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130557800-130568600	Genic enhancers	K562	blood
2	chr8:130562400-130569000	Weak transcription	Psoas Muscle	Psoas
3	chr8:130564600-130568600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:130565000-130568800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:130565000-130569000	Weak transcription	Adipose Nuclei	Adipose
6	chr8:130565200-130570000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr8:130565200-130571000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr8:130565400-130568400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:130565400-130569600	Weak transcription	Fetal Heart	heart
10	chr8:130566000-130568800	Enhancers	Thymus	Thymus
11	chr8:130567200-130569200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr8:130567200-130572000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr8:130567200-130572000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr8:130567800-130569000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr8:130567800-130569200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr8:130567800-130569200	Weak transcription	Fetal Muscle Leg	muscle
17	chr8:130568000-130568400	Enhancers	GM12878-XiMat	blood
18	chr8:130568000-130569000	Enhancers	Dnd41	blood
19	chr8:130568200-130569200	Weak transcription	Fetal Thymus	thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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