Variant report

Variant	rs6982553
Chromosome Location	chr8:130589974-130589975
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130582570..130584865-chr8:130587771..130590873,3	K562	blood:
2	chr8:128746655..128749032-chr8:130587647..130590349,2	K562	blood:

Variant related genes	Relation type
ENSG00000136997	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10094039	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10098310	0.89[JPT][hapmap]
rs10103048	1.00[JPT][hapmap]
rs10107630	0.95[JPT][hapmap]
rs10505544	0.89[CEU][hapmap]
rs10956482	0.85[EUR][1000 genomes]
rs10956483	0.89[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs10956485	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap]
rs11774794	0.89[CEU][hapmap]
rs11785889	1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs12542190	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12542618	0.90[CEU][hapmap]
rs12548063	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12676406	0.80[ASN][1000 genomes]
rs12677963	0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs12679579	0.90[CEU][hapmap]
rs12679981	0.89[CEU][hapmap]
rs12681229	0.95[CHB][hapmap];0.84[JPT][hapmap]
rs13277237	0.94[JPT][hapmap]
rs1368700	0.85[CEU][hapmap];0.94[CHB][hapmap];0.89[JPT][hapmap];0.82[ASN][1000 genomes]
rs1433577	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1433580	0.86[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs1583333	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs1594774	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16904119	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16904121	0.94[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs16904123	0.94[CHB][hapmap];0.89[JPT][hapmap]
rs1865223	0.94[JPT][hapmap]
rs1946627	0.81[ASN][1000 genomes]
rs2043404	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2163952	1.00[JPT][hapmap]
rs2395906	1.00[JPT][hapmap]
rs4319050	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4407843	0.89[JPT][hapmap]
rs4480083	0.89[JPT][hapmap]
rs57924547	0.95[ASN][1000 genomes]
rs59292525	0.99[ASN][1000 genomes]
rs61453473	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6470739	0.85[EUR][1000 genomes]
rs6470742	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6470743	0.81[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap]
rs6982371	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7000230	0.91[ASN][1000 genomes]
rs7000289	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.91[ASN][1000 genomes]
rs7000320	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7000372	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7005227	0.86[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.82[ASN][1000 genomes]
rs7006214	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7008811	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.89[ASN][1000 genomes]
rs7011870	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7014560	0.80[EUR][1000 genomes]
rs72609887	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7829245	0.82[EUR][1000 genomes]
rs7831493	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7840067	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7846327	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs892350	0.82[EUR][1000 genomes]
rs892351	0.82[EUR][1000 genomes]
rs9642890	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs996313	0.86[CEU][hapmap];0.95[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519611	chr8:130589676-130590017	ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv523007	chr8:130589676-130590017	Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130589600-130590000	Weak transcription	K562	blood

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