Variant report

Variant	rs10103048
Chromosome Location	chr8:130602281-130602282
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10094039	1.00[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs10098310	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10107630	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10956483	0.91[JPT][hapmap]
rs10956485	0.95[JPT][hapmap]
rs11785889	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs12542190	0.95[JPT][hapmap]
rs12544501	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12677963	0.95[JPT][hapmap]
rs12681229	0.81[JPT][hapmap]
rs13277237	0.84[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.88[MKK][hapmap];0.91[TSI][hapmap];0.82[YRI][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13280084	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1368700	0.82[GIH][hapmap];0.86[JPT][hapmap]
rs1433577	0.95[JPT][hapmap]
rs1433580	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs1579555	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1583333	0.81[JPT][hapmap]
rs16904119	0.95[JPT][hapmap]
rs16904121	0.80[JPT][hapmap]
rs16904123	0.86[JPT][hapmap]
rs1865223	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1991866	0.85[CEU][hapmap];0.87[GIH][hapmap];0.84[TSI][hapmap]
rs2163952	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.89[TSI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2217715	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2395905	0.89[CEU][hapmap];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2395906	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.86[TSI][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28500514	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28854585	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4291235	0.84[EUR][1000 genomes]
rs4407843	0.89[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4480083	0.89[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4486162	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55964818	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6470742	0.95[JPT][hapmap]
rs6470743	0.82[GIH][hapmap];0.81[JPT][hapmap]
rs6982553	1.00[JPT][hapmap]
rs6989110	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7000230	0.82[ASN][1000 genomes]
rs7000289	0.82[GIH][hapmap];0.91[JPT][hapmap];0.84[ASN][1000 genomes]
rs7000320	0.95[JPT][hapmap]
rs7000372	0.95[JPT][hapmap]
rs7005227	0.81[JPT][hapmap]
rs7008811	0.82[GIH][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs7011870	0.95[JPT][hapmap]
rs7840067	0.95[JPT][hapmap]
rs7846327	0.82[JPT][hapmap]
rs996313	0.81[JPT][hapmap]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130592600-130603600	Enhancers	Dnd41	blood
2	chr8:130592600-130607000	Enhancers	Primary hematopoietic stem cells	blood
3	chr8:130595200-130605800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr8:130595600-130603400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr8:130596000-130603600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr8:130599400-130605200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr8:130599400-130605400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr8:130599400-130605600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr8:130600000-130602400	Weak transcription	Fetal Thymus	thymus
10	chr8:130601400-130602600	Weak transcription	Placenta	Placenta
11	chr8:130602200-130602400	Enhancers	Thymus	Thymus
12	chr8:130602200-130602600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:130602200-130602800	Enhancers	Adipose Nuclei	Adipose
14	chr8:130602200-130606000	Enhancers	K562	blood
15	chr8:130602200-130606400	Enhancers	Fetal Muscle Leg	muscle
16	chr8:130602200-130606800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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