Variant report

Variant	rs10094039
Chromosome Location	chr8:130589676-130589677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130582570..130584865-chr8:130587771..130590873,3	K562	blood:
2	chr8:128746655..128749032-chr8:130587647..130590349,2	K562	blood:

Variant related genes	Relation type
ENSG00000136997	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10098310	1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs10103048	1.00[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs10107630	1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs10956483	0.95[JPT][hapmap]
rs10956485	0.90[JPT][hapmap]
rs11785889	0.95[JPT][hapmap]
rs12542190	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12548063	0.82[ASN][1000 genomes]
rs12677963	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs13277237	1.00[CHB][hapmap];0.81[CHD][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs13280084	0.82[ASN][1000 genomes]
rs1368700	0.81[JPT][hapmap]
rs1433577	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1433580	0.90[JPT][hapmap]
rs1594774	0.81[ASN][1000 genomes]
rs16904119	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs16904123	0.81[JPT][hapmap]
rs1865223	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs2043404	0.81[ASN][1000 genomes]
rs2163952	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs2217715	0.81[ASN][1000 genomes]
rs2395906	1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs4319050	0.81[ASN][1000 genomes]
rs4407843	0.91[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs4480083	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs59292525	0.80[ASN][1000 genomes]
rs61453473	0.81[ASN][1000 genomes]
rs6470742	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6982371	0.81[ASN][1000 genomes]
rs6982553	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7000230	0.81[ASN][1000 genomes]
rs7000289	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs7000320	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7000372	1.00[JPT][hapmap]
rs7006214	0.81[ASN][1000 genomes]
rs7008811	0.90[JPT][hapmap]
rs7011870	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7840067	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7846327	0.86[JPT][hapmap];0.81[ASN][1000 genomes]
rs9642890	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519611	chr8:130589676-130590017	ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv523007	chr8:130589676-130590017	Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130589600-130590000	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links