Variant report

Variant	rs4480083
Chromosome Location	chr8:130609320-130609321
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130608180..130609853-chr8:130686096..130687708,2	K562	blood:
2	chr8:130603530..130605537-chr8:130607519..130610435,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10094039	0.91[CHB][hapmap];0.82[JPT][hapmap]
rs10098310	1.00[CEU][hapmap];0.91[CHB][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10103048	0.89[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10107630	0.96[CEU][hapmap];0.91[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10956485	0.82[JPT][hapmap]
rs11785889	0.82[JPT][hapmap]
rs12542190	0.82[JPT][hapmap]
rs12544501	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12676406	0.83[ASN][1000 genomes]
rs12676428	0.84[ASN][1000 genomes]
rs12677963	0.81[JPT][hapmap]
rs12681229	0.95[JPT][hapmap]
rs13277237	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13280084	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1368700	1.00[JPT][hapmap]
rs1433577	0.82[JPT][hapmap]
rs1433580	0.82[JPT][hapmap]
rs1579555	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1583333	0.95[JPT][hapmap];0.80[ASN][1000 genomes]
rs16904119	0.82[JPT][hapmap]
rs16904121	0.95[JPT][hapmap]
rs16904123	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1865223	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1991866	0.96[CEU][hapmap]
rs2163952	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2217715	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2395905	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2395906	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28500514	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28854585	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4291235	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4407843	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4486162	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55964818	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6470742	0.81[JPT][hapmap]
rs6470743	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs6982553	0.89[JPT][hapmap]
rs6989110	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7000320	0.82[JPT][hapmap]
rs7000372	0.81[JPT][hapmap]
rs7005227	0.95[JPT][hapmap]
rs7008811	0.81[JPT][hapmap]
rs7011870	0.82[JPT][hapmap]
rs7840067	0.82[JPT][hapmap]
rs996313	0.95[JPT][hapmap]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130609200-130611400	ZNF genes & repeats	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links