Variant report

Variant	rs12542190
Chromosome Location	chr8:130594761-130594762
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:130592934..130595318-chr8:130597344..130598932,2	K562	blood:
2	chr8:128748142..128750847-chr8:130594288..130596235,2	K562	blood:
3	chr8:130594211..130595830-chr8:130597987..130599684,2	K562	blood:
4	chr8:130315366..130317097-chr8:130593776..130595737,2	K562	blood:
5	chr8:128746422..128748430-chr8:130592546..130594989,2	K562	blood:
6	chr8:130583915..130590962-chr8:130591367..130597436,13	K562	blood:
7	chr8:130593091..130595640-chr8:130733142..130736387,3	K562	blood:
8	chr8:130593017..130595980-chr8:130602538..130604620,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000136997	Chromatin interaction
ENSG00000229140	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10094039	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs10098310	0.85[JPT][hapmap]
rs10103048	0.95[JPT][hapmap]
rs10107630	0.90[JPT][hapmap]
rs10956483	0.91[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10956485	0.96[CHB][hapmap];0.90[JPT][hapmap]
rs11785889	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs12548063	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12676406	0.80[ASN][1000 genomes]
rs12677963	0.95[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12681229	0.87[CHB][hapmap]
rs13277237	0.90[JPT][hapmap]
rs1368700	0.91[CHB][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1433577	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1433580	0.96[CHB][hapmap];0.90[JPT][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1583333	0.91[CHB][hapmap]
rs1594774	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16904119	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16904121	0.91[CHB][hapmap];0.82[ASN][1000 genomes]
rs16904123	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs1865223	0.90[JPT][hapmap]
rs1946627	0.83[ASN][1000 genomes]
rs2043404	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2163952	0.95[JPT][hapmap]
rs2395906	0.95[JPT][hapmap]
rs4319050	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4407843	0.82[JPT][hapmap]
rs4480083	0.82[JPT][hapmap]
rs57924547	0.94[ASN][1000 genomes]
rs59292525	0.97[ASN][1000 genomes]
rs61453473	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6470742	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6470743	0.91[CHB][hapmap]
rs6982371	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6982553	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7000230	0.91[ASN][1000 genomes]
rs7000289	0.95[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7000320	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7000372	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7005227	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs7006214	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7008811	0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7011870	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72609887	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7831493	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7840067	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7846327	1.00[CHB][hapmap];0.86[JPT][hapmap];0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9642890	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs996313	0.87[CHB][hapmap];0.83[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130592400-130601200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr8:130592600-130595400	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr8:130592600-130603600	Enhancers	Dnd41	blood
4	chr8:130592600-130607000	Enhancers	Primary hematopoietic stem cells	blood
5	chr8:130593800-130594800	Enhancers	Primary B cells from cord blood	blood
6	chr8:130593800-130595600	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr8:130593800-130595600	Enhancers	Fetal Thymus	thymus
8	chr8:130593800-130596800	Flanking Active TSS	K562	blood
9	chr8:130594000-130595000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr8:130594000-130595000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr8:130594000-130595200	Enhancers	Thymus	Thymus
12	chr8:130594000-130596200	Enhancers	Fetal Muscle Leg	muscle
13	chr8:130594200-130595200	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr8:130594600-130594800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
15	chr8:130594600-130594800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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