Variant report

Variant	rs59292525
Chromosome Location	chr8:130589763-130589764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130582570..130584865-chr8:130587771..130590873,3	K562	blood:
2	chr8:128746655..128749032-chr8:130587647..130590349,2	K562	blood:

Variant related genes	Relation type
ENSG00000136997	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10094039	0.80[ASN][1000 genomes]
rs10956483	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11785889	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12542190	0.97[ASN][1000 genomes]
rs12548063	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12677963	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1368700	0.81[ASN][1000 genomes]
rs1433577	0.96[ASN][1000 genomes]
rs1433580	0.87[ASN][1000 genomes]
rs1594774	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16904119	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs16904121	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1946627	0.81[ASN][1000 genomes]
rs2043404	0.94[ASN][1000 genomes]
rs4319050	0.98[ASN][1000 genomes]
rs57924547	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61453473	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6470742	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6982371	0.98[ASN][1000 genomes]
rs6982553	0.99[ASN][1000 genomes]
rs7000230	0.92[ASN][1000 genomes]
rs7000289	0.90[ASN][1000 genomes]
rs7000320	0.99[ASN][1000 genomes]
rs7000372	0.95[ASN][1000 genomes]
rs7005227	0.81[ASN][1000 genomes]
rs7006214	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7008811	0.88[ASN][1000 genomes]
rs7011870	0.98[ASN][1000 genomes]
rs72609887	0.97[ASN][1000 genomes]
rs7831493	0.92[ASN][1000 genomes]
rs7840067	0.98[ASN][1000 genomes]
rs7846327	0.98[ASN][1000 genomes]
rs9642890	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs996313	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519611	chr8:130589676-130590017	ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv523007	chr8:130589676-130590017	Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130589600-130590000	Weak transcription	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links