Variant report

Variant	rs9642890
Chromosome Location	chr8:130589170-130589171
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr8:130588815-130589218	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130582570..130584865-chr8:130587771..130590873,3	K562	blood:
2	chr8:128746655..128749032-chr8:130587647..130590349,2	K562	blood:

Variant related genes	Relation type
CCDC26	TF binding region
ENSG00000136997	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10094039	0.82[ASN][1000 genomes]
rs10956482	0.85[EUR][1000 genomes]
rs10956483	0.92[ASN][1000 genomes]
rs11785889	0.88[ASN][1000 genomes]
rs12542190	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12548063	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12676406	0.80[ASN][1000 genomes]
rs12677963	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1368700	0.82[ASN][1000 genomes]
rs1433577	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1433580	0.88[ASN][1000 genomes]
rs1594774	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16904119	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16904121	0.81[ASN][1000 genomes]
rs1946627	0.81[ASN][1000 genomes]
rs2043404	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4319050	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57924547	0.95[ASN][1000 genomes]
rs59292525	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs61453473	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6470739	0.85[EUR][1000 genomes]
rs6470742	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6982371	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6982553	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7000230	0.91[ASN][1000 genomes]
rs7000289	0.91[ASN][1000 genomes]
rs7000320	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7000372	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7005227	0.82[ASN][1000 genomes]
rs7006214	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7008811	0.89[ASN][1000 genomes]
rs7011870	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7014560	0.81[EUR][1000 genomes]
rs72609887	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7829245	0.83[EUR][1000 genomes]
rs7831493	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7840067	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7846327	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs892350	0.83[EUR][1000 genomes]
rs892351	0.83[EUR][1000 genomes]
rs996313	0.81[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130588800-130589400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr8:130589000-130589200	ZNF genes & repeats	Dnd41	blood
3	chr8:130589000-130589200	Flanking Active TSS	K562	blood

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