Variant report

Variant	rs6470742
Chromosome Location	chr8:130585355-130585356
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130526663..130528640-chr8:130584708..130586467,2	K562	blood:
2	chr8:130560404..130562834-chr8:130584405..130585916,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10094039	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10098310	0.85[JPT][hapmap]
rs10103048	0.95[JPT][hapmap]
rs10107630	0.90[JPT][hapmap]
rs10505544	0.85[CEU][hapmap]
rs10956482	0.86[CHD][hapmap];0.91[MEX][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10956483	0.90[CHB][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs10956485	0.95[CHB][hapmap];0.90[JPT][hapmap]
rs11774794	0.85[CEU][hapmap]
rs11785889	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs12542190	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12542618	0.85[CEU][hapmap]
rs12548063	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12677963	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12679579	0.85[CEU][hapmap]
rs12679981	0.85[CEU][hapmap]
rs12681229	0.91[CHB][hapmap]
rs13277237	0.90[JPT][hapmap]
rs1368700	0.82[CEU][hapmap];0.91[CHB][hapmap];0.81[CHD][hapmap];0.91[GIH][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs1433577	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1433580	0.82[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs1583333	0.91[CHB][hapmap]
rs1594774	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16904119	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16904121	0.91[CHB][hapmap];0.81[CHD][hapmap];0.81[ASN][1000 genomes]
rs16904123	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs1865223	0.90[JPT][hapmap]
rs1946627	0.82[ASN][1000 genomes]
rs2043404	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2163952	0.95[JPT][hapmap]
rs2395906	0.95[JPT][hapmap]
rs4319050	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4407843	0.81[JPT][hapmap]
rs4480083	0.81[JPT][hapmap]
rs57924547	0.95[ASN][1000 genomes]
rs59292525	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs61453473	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6470739	0.82[CEU][hapmap];0.82[CHD][hapmap];0.87[MEX][hapmap];0.84[EUR][1000 genomes]
rs6470743	0.91[CHB][hapmap];0.91[GIH][hapmap]
rs6982371	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6982553	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7000230	0.90[ASN][1000 genomes]
rs7000289	0.82[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs7000320	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7000372	0.95[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7005227	0.82[CEU][hapmap];0.91[CHB][hapmap];0.81[ASN][1000 genomes]
rs7006214	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7008811	0.82[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs7011870	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72609887	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7829245	0.81[EUR][1000 genomes]
rs7831493	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7840067	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7846327	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs892350	0.81[EUR][1000 genomes]
rs892351	0.81[EUR][1000 genomes]
rs9642890	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs996313	0.82[CEU][hapmap];0.91[CHB][hapmap];0.82[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs6470742	EFR3A	cis	cerebellum	SCAN
rs6470742	PHF20L1	cis	cerebellum	SCAN
rs6470742	KCNQ3	cis	parietal	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130568800-130587000	Weak transcription	Thymus	Thymus
2	chr8:130583200-130588800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:130584600-130587400	Active TSS	K562	blood
4	chr8:130585000-130588000	Flanking Active TSS	Dnd41	blood

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