Variant report

Variant	rs1865223
Chromosome Location	chr8:130606476-130606477
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130599928..130602173-chr8:130605969..130607629,2	MCF-7	breast:
2	chr8:130605721..130608302-chr8:130609684..130611618,2	K562	blood:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10094039	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]
rs10098310	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10103048	0.89[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.89[TSI][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10107630	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10956483	0.85[JPT][hapmap]
rs10956485	1.00[JPT][hapmap]
rs11785889	1.00[JPT][hapmap]
rs12542190	0.90[JPT][hapmap]
rs12544501	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12677963	0.90[JPT][hapmap]
rs12681229	0.86[JPT][hapmap]
rs13277237	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13280084	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1368700	0.82[GIH][hapmap];0.81[JPT][hapmap]
rs1433577	0.90[JPT][hapmap]
rs1433580	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1579555	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16904119	0.90[JPT][hapmap]
rs16904121	0.85[JPT][hapmap]
rs16904123	0.81[JPT][hapmap]
rs1991866	0.96[CEU][hapmap];0.87[GIH][hapmap];0.82[TSI][hapmap]
rs2163952	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2217715	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2395905	1.00[CEU][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2395906	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.81[MKK][hapmap];0.98[TSI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28500514	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28854585	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4291235	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4407843	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4480083	1.00[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4486162	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55964818	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6470742	0.90[JPT][hapmap]
rs6470743	0.82[GIH][hapmap];0.86[JPT][hapmap]
rs6982553	0.94[JPT][hapmap]
rs6989110	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7000289	0.82[GIH][hapmap];0.95[JPT][hapmap]
rs7000320	0.90[JPT][hapmap]
rs7000372	0.90[JPT][hapmap]
rs7005227	0.86[JPT][hapmap]
rs7008811	0.82[GIH][hapmap];1.00[JPT][hapmap]
rs7011870	0.90[JPT][hapmap]
rs7840067	0.90[JPT][hapmap]
rs996313	0.86[JPT][hapmap]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130592600-130607000	Enhancers	Primary hematopoietic stem cells	blood
2	chr8:130602200-130606800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr8:130605000-130606600	Flanking Active TSS	Dnd41	blood
4	chr8:130606000-130607400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr8:130606400-130609200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood

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