Variant report

Variant	rs11785889
Chromosome Location	chr8:130603247-130603248
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130593017..130595980-chr8:130602538..130604620,4	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10094039	0.95[JPT][hapmap]
rs10098310	0.95[JPT][hapmap]
rs10103048	0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs10107630	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10956483	0.84[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap];0.82[ASN][1000 genomes]
rs10956485	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12542190	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs12548063	0.88[ASN][1000 genomes]
rs12676406	0.89[ASN][1000 genomes]
rs12676428	0.87[ASN][1000 genomes]
rs12677963	0.93[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12681229	0.87[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap]
rs13277237	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs1368700	0.95[CHB][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs1433577	0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs1433580	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1433585	0.81[EUR][1000 genomes]
rs1583333	0.93[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1594774	0.88[ASN][1000 genomes]
rs16904119	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs16904121	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16904123	0.93[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16904126	0.80[EUR][1000 genomes]
rs1865223	1.00[JPT][hapmap]
rs1946627	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2043404	0.88[ASN][1000 genomes]
rs2163952	0.95[JPT][hapmap]
rs2395906	0.95[JPT][hapmap]
rs4319050	0.88[ASN][1000 genomes]
rs4407843	0.82[JPT][hapmap]
rs4480083	0.82[JPT][hapmap]
rs57924547	0.85[ASN][1000 genomes]
rs59292525	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs61453473	0.88[ASN][1000 genomes]
rs6470742	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs6470743	0.95[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs6982371	0.88[ASN][1000 genomes]
rs6982553	1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs7000230	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7000289	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7000320	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs7000372	0.90[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs7005227	0.91[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs7006214	0.88[ASN][1000 genomes]
rs7008811	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs7011870	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs72609887	0.86[ASN][1000 genomes]
rs7831493	0.82[ASN][1000 genomes]
rs7840067	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs7846327	0.95[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs9642890	0.88[ASN][1000 genomes]
rs996313	0.91[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130592600-130603600	Enhancers	Dnd41	blood
2	chr8:130592600-130607000	Enhancers	Primary hematopoietic stem cells	blood
3	chr8:130595200-130605800	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr8:130595600-130603400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr8:130596000-130603600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr8:130599400-130605200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr8:130599400-130605400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr8:130599400-130605600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr8:130602200-130606000	Enhancers	K562	blood
10	chr8:130602200-130606400	Enhancers	Fetal Muscle Leg	muscle
11	chr8:130602200-130606800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr8:130602400-130603800	Weak transcription	Thymus	Thymus
13	chr8:130602400-130606400	Enhancers	Fetal Thymus	thymus
14	chr8:130602600-130604200	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr8:130602800-130604000	Weak transcription	Placenta	Placenta
16	chr8:130603000-130603800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr8:130603000-130604000	Weak transcription	Fetal Muscle Trunk	muscle
18	chr8:130603200-130603600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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