Variant report

Variant	rs10505544
Chromosome Location	chr8:130558870-130558871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:130556097..130559483-chr8:130562809..130564469,3	K562	blood:
2	chr8:130425114..130429540-chr8:130556551..130560085,3	K562	blood:
3	chr19:51869346..51870037-chr8:130558816..130559550,2	NB4	blood:
4	chr8:130549375..130552459-chr8:130554231..130559493,6	K562	blood:
5	chr8:130550430..130553918-chr8:130558468..130561396,4	K562	blood:

Variant related genes	Relation type
ENSG00000105379	Chromatin interaction
ENSG00000253926	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11774794	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12542618	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12677963	0.83[GIH][hapmap]
rs12679579	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12679981	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16904119	0.81[CEU][hapmap]
rs1821339	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2012880	0.99[ASN][1000 genomes]
rs4733710	0.81[ASW][hapmap];0.81[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.90[MKK][hapmap];0.84[TSI][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs58384810	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6470742	0.85[CEU][hapmap]
rs6982553	0.89[CEU][hapmap]
rs7000320	0.81[CEU][hapmap]
rs7000372	0.81[CEU][hapmap]
rs7011870	0.81[CEU][hapmap]
rs72609881	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72609882	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72609883	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72609884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72609886	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7814625	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs7840067	0.81[CEU][hapmap]
rs7846327	0.81[CEU][hapmap]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130555200-130560600	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr8:130555400-130561600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr8:130556800-130568000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr8:130557800-130561200	Enhancers	Thymus	Thymus
5	chr8:130557800-130561200	Flanking Active TSS	GM12878-XiMat	blood
6	chr8:130557800-130568600	Genic enhancers	K562	blood
7	chr8:130558000-130562600	Enhancers	Primary hematopoietic stem cells	blood
8	chr8:130558200-130559000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr8:130558200-130559400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr8:130558200-130561000	Enhancers	Fetal Thymus	thymus
11	chr8:130558200-130563000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr8:130558200-130564200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr8:130558200-130564600	Enhancers	Primary B cells from peripheral blood	blood
14	chr8:130558400-130559000	Enhancers	Primary B cells from cord blood	blood
15	chr8:130558400-130561200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr8:130558600-130560600	Enhancers	Primary T cells from cord blood	blood
17	chr8:130558600-130563000	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr8:130558800-130559200	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr8:130558800-130559200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr8:130558800-130559400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr8:130558800-130559400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr8:130558800-130560200	Flanking Active TSS	Dnd41	blood

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