Variant report

Variant	rs72609886
Chromosome Location	chr8:130563474-130563475
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:130548153..130550436-chr8:130561567..130563601,2	K562	blood:
2	chr8:130556097..130559483-chr8:130562809..130564469,3	K562	blood:
3	chr8:130561706..130563551-chr8:130592862..130594645,2	K562	blood:
4	chr8:130555128..130557292-chr8:130562897..130565321,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10505544	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11774794	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12542618	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12679579	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12679981	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1821339	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2012880	0.97[ASN][1000 genomes]
rs4733710	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs58384810	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72609881	0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72609882	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72609883	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72609884	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130556800-130568000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr8:130557800-130568600	Genic enhancers	K562	blood
3	chr8:130558200-130564200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr8:130558200-130564600	Enhancers	Primary B cells from peripheral blood	blood
5	chr8:130559200-130564400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr8:130560000-130564000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr8:130560000-130564000	Weak transcription	Brain Hippocampus Middle	brain
8	chr8:130560200-130564000	Enhancers	Primary B cells from cord blood	blood
9	chr8:130560400-130564600	Genic enhancers	Dnd41	blood
10	chr8:130560400-130565400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr8:130560800-130565000	Enhancers	Liver	Liver
12	chr8:130561000-130563600	Weak transcription	Fetal Thymus	thymus
13	chr8:130561000-130564400	Weak transcription	Left Ventricle	heart
14	chr8:130561000-130565400	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr8:130561600-130563600	Flanking Active TSS	GM12878-XiMat	blood
16	chr8:130561600-130565400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr8:130561600-130565600	Enhancers	Thymus	Thymus
18	chr8:130561800-130565000	Enhancers	Adipose Nuclei	Adipose
19	chr8:130562400-130563600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr8:130562400-130564000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr8:130562400-130569000	Weak transcription	Psoas Muscle	Psoas
22	chr8:130562600-130563800	Enhancers	Monocytes-CD14+_RO01746	blood
23	chr8:130562600-130566200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr8:130563000-130563600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr8:130563000-130564600	Enhancers	A549	lung
26	chr8:130563200-130565400	Enhancers	Fetal Heart	heart
27	chr8:130563400-130564800	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr8:130563400-130565000	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr8:130563400-130565200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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