Variant report

Variant	rs12679579
Chromosome Location	chr8:130531176-130531177
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130520024..130525389-chr8:130526059..130531772,7	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10505544	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11774794	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12542618	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12679981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16904119	0.82[CEU][hapmap]
rs1821339	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2012880	0.98[ASN][1000 genomes]
rs4733710	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs58384810	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6470742	0.85[CEU][hapmap]
rs6982553	0.90[CEU][hapmap]
rs7000320	0.82[CEU][hapmap]
rs7000372	0.81[CEU][hapmap]
rs7011870	0.82[CEU][hapmap]
rs72609881	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72609882	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72609883	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72609884	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72609886	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7814625	0.83[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes]
rs7840067	0.82[CEU][hapmap]
rs7846327	0.81[CEU][hapmap]

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130526800-130531800	Strong transcription	K562	blood
2	chr8:130528800-130532600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr8:130529000-130532800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr8:130529200-130538400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:130530400-130532600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:130530600-130534200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr8:130530800-130531200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr8:130530800-130532000	ZNF genes & repeats	Dnd41	blood
9	chr8:130530800-130532800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:130531000-130531200	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell

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