Variant report

Variant	rs58384810
Chromosome Location	chr8:130549544-130549545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:130541489..130544432-chr8:130549499..130552353,3	K562	blood:
2	chr8:130546472..130548166-chr8:130548842..130551608,2	MCF-7	breast:
3	chr8:130547187..130549889-chr8:130563626..130566277,3	K562	blood:
4	chr8:130548145..130550134-chr8:130551615..130553486,2	MCF-7	breast:
5	chr8:130549375..130552459-chr8:130554231..130559493,6	K562	blood:
6	chr8:130549067..130551564-chr8:130551716..130553233,2	K562	blood:
7	chr8:130547962..130549604-chr8:130709178..130711041,2	MCF-7	breast:
8	chr8:130547484..130550875-chr8:130551636..130555731,6	K562	blood:
9	chr8:130548153..130550436-chr8:130561567..130563601,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10505544	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11774794	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12542618	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12679579	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12679981	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1821339	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2012880	0.99[ASN][1000 genomes]
rs4733710	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs72609881	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72609882	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72609883	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72609884	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72609886	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130541600-130549600	Weak transcription	Right Atrium	heart
2	chr8:130546200-130551800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr8:130546600-130551000	Enhancers	Dnd41	blood
4	chr8:130547200-130550000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:130547200-130551800	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr8:130547400-130550600	Enhancers	GM12878-XiMat	blood
7	chr8:130547400-130550800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:130547400-130550800	Enhancers	Primary hematopoietic stem cells	blood
9	chr8:130547400-130555600	Genic enhancers	K562	blood
10	chr8:130547600-130551800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr8:130548200-130551600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr8:130548400-130551600	Weak transcription	Thymus	Thymus
13	chr8:130548600-130550000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr8:130548800-130549800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr8:130548800-130551600	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr8:130549000-130551000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr8:130549200-130551000	Weak transcription	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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