Variant report

Variant	rs7030110
Chromosome Location	chr9:98583020-98583021
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:98566028..98568952-chr9:98582785..98584307,2	MCF-7	breast:
2	chr9:98580885..98583870-chr9:98636355..98638395,3	MCF-7	breast:
3	chr9:98582540..98585042-chr9:98586577..98588192,2	MCF-7	breast:
4	chr9:98582769..98584675-chr9:98589600..98592013,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175611	Chromatin interaction
ENSG00000182150	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11998816	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12000947	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12004510	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12004765	0.83[AMR][1000 genomes]
rs56938111	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7041571	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7043426	0.83[AMR][1000 genomes]
rs73534614	0.83[AMR][1000 genomes]
rs7850319	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893598	chr9:98508628-98645674	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
2	nsv482884	chr9:98530027-98691937	Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98570400-98585800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:98570400-98589200	Weak transcription	Left Ventricle	heart
3	chr9:98570400-98589200	Weak transcription	Right Ventricle	heart
4	chr9:98570400-98593200	Weak transcription	Gastric	stomach
5	chr9:98570400-98593800	Weak transcription	Right Atrium	heart
6	chr9:98570600-98585000	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr9:98570800-98601400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr9:98573000-98585400	Weak transcription	Thymus	Thymus
9	chr9:98576000-98596000	Weak transcription	Aorta	Aorta
10	chr9:98576800-98584800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr9:98577600-98585600	Weak transcription	Pancreas	Pancrea
12	chr9:98577800-98584400	Weak transcription	NHLF	lung
13	chr9:98579200-98584400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:98579800-98583600	Weak transcription	Ovary	ovary
15	chr9:98579800-98583800	Weak transcription	Hela-S3	cervix
16	chr9:98580000-98584600	Weak transcription	A549	lung
17	chr9:98581200-98584000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr9:98581800-98593800	Weak transcription	Fetal Intestine Small	intestine
19	chr9:98582400-98584600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr9:98582400-98584600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr9:98582400-98584800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr9:98582400-98585000	Weak transcription	Fetal Stomach	stomach
23	chr9:98582400-98585600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr9:98582600-98583800	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr9:98582600-98584800	Weak transcription	HUVEC	blood vessel
26	chr9:98582600-98584800	Weak transcription	NHDF-Ad	bronchial
27	chr9:98582600-98586000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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