Variant report

Variant	rs73534614
Chromosome Location	chr9:98648275-98648276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98643243..98646230-chr9:98646548..98650436,4	MCF-7	breast:
2	chr9:98642876..98646721-chr9:98647995..98651810,4	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11998816	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12000947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12001253	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12004510	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12004765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45604033	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55870020	1.00[EUR][1000 genomes]
rs56275194	1.00[EUR][1000 genomes]
rs56938111	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58715455	1.00[EUR][1000 genomes]
rs59510923	1.00[EUR][1000 genomes]
rs60301271	1.00[EUR][1000 genomes]
rs6478983	1.00[EUR][1000 genomes]
rs6479043	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7021641	1.00[EUR][1000 genomes]
rs7030110	0.83[AMR][1000 genomes]
rs7030427	1.00[EUR][1000 genomes]
rs7031397	1.00[EUR][1000 genomes]
rs7039115	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7041571	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7043426	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7043732	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7046189	1.00[EUR][1000 genomes]
rs7047126	1.00[EUR][1000 genomes]
rs73528896	1.00[EUR][1000 genomes]
rs73528901	1.00[EUR][1000 genomes]
rs73530711	1.00[EUR][1000 genomes]
rs73656542	1.00[EUR][1000 genomes]
rs73656543	1.00[EUR][1000 genomes]
rs73656554	1.00[EUR][1000 genomes]
rs73656561	1.00[EUR][1000 genomes]
rs73656564	1.00[EUR][1000 genomes]
rs7847478	1.00[EUR][1000 genomes]
rs7850319	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7854738	1.00[EUR][1000 genomes]
rs7860019	1.00[EUR][1000 genomes]
rs7875882	1.00[EUR][1000 genomes]
rs892647	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482884	chr9:98530027-98691937	Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv893599	chr9:98542410-98991254	Bivalent Enhancer Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
3	nsv893600	chr9:98608989-98775459	Weak transcription Strong transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98638800-98648400	Weak transcription	Lung	lung
2	chr9:98638800-98649000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:98638800-98654800	Weak transcription	Esophagus	oesophagus
4	chr9:98638800-98702200	Weak transcription	Pancreas	Pancrea
5	chr9:98639400-98649000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr9:98639400-98650800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:98639400-98677800	Weak transcription	Placenta	Placenta
8	chr9:98639400-98678000	Weak transcription	Ovary	ovary
9	chr9:98639600-98649200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr9:98639600-98678000	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr9:98639800-98664200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr9:98639800-98677800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr9:98640000-98649000	Weak transcription	Spleen	Spleen
14	chr9:98640000-98661600	Weak transcription	Right Atrium	heart
15	chr9:98640000-98663600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr9:98640000-98678200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr9:98640000-98680600	Weak transcription	Colonic Mucosa	Colon
18	chr9:98640000-98685600	Weak transcription	Right Ventricle	heart
19	chr9:98640000-98718600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr9:98640200-98678200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr9:98640400-98649200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr9:98640400-98664800	Weak transcription	Brain Substantia Nigra	brain
23	chr9:98640400-98677800	Weak transcription	Psoas Muscle	Psoas
24	chr9:98640600-98649000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr9:98640600-98678000	Weak transcription	Brain Cingulate Gyrus	brain
26	chr9:98641600-98650000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr9:98642200-98652400	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr9:98642200-98654600	Weak transcription	Fetal Intestine Small	intestine
29	chr9:98642200-98663600	Weak transcription	Hela-S3	cervix
30	chr9:98642600-98678000	Weak transcription	Colon Smooth Muscle	Colon
31	chr9:98642600-98680600	Weak transcription	Rectal Smooth Muscle	rectum
32	chr9:98642800-98668200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr9:98642800-98681800	Weak transcription	Fetal Kidney	kidney
34	chr9:98643000-98648400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr9:98643200-98648400	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr9:98643200-98649000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr9:98643200-98649800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr9:98643200-98651200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr9:98643400-98648400	Strong transcription	A549	lung
40	chr9:98643400-98649400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr9:98643600-98649400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr9:98643600-98649800	Strong transcription	Osteobl	bone
43	chr9:98643800-98648400	Strong transcription	Rectal Mucosa Donor 29	rectum
44	chr9:98643800-98649600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr9:98644200-98648800	Strong transcription	Fetal Muscle Leg	muscle
46	chr9:98644200-98649400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr9:98644200-98649600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr9:98644200-98650800	Weak transcription	Brain Angular Gyrus	brain
49	chr9:98644200-98670600	Weak transcription	Duodenum Smooth Muscle	Duodenum
50	chr9:98644400-98678400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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