Variant report

Variant	rs7847478
Chromosome Location	chr9:98525035-98525036
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11998816	1.00[EUR][1000 genomes]
rs12000947	1.00[EUR][1000 genomes]
rs12004510	1.00[EUR][1000 genomes]
rs55870020	1.00[EUR][1000 genomes]
rs56275194	1.00[EUR][1000 genomes]
rs56938111	1.00[EUR][1000 genomes]
rs58715455	1.00[EUR][1000 genomes]
rs59510923	1.00[EUR][1000 genomes]
rs60301271	1.00[EUR][1000 genomes]
rs6478983	1.00[EUR][1000 genomes]
rs7021641	1.00[EUR][1000 genomes]
rs7030427	1.00[EUR][1000 genomes]
rs7031397	1.00[EUR][1000 genomes]
rs7041571	1.00[EUR][1000 genomes]
rs7043426	1.00[EUR][1000 genomes]
rs7043732	1.00[EUR][1000 genomes]
rs7046189	1.00[EUR][1000 genomes]
rs7047126	1.00[EUR][1000 genomes]
rs73528896	1.00[EUR][1000 genomes]
rs73528901	1.00[EUR][1000 genomes]
rs73530711	1.00[EUR][1000 genomes]
rs73534614	1.00[EUR][1000 genomes]
rs73656542	1.00[EUR][1000 genomes]
rs73656543	1.00[EUR][1000 genomes]
rs73656554	1.00[EUR][1000 genomes]
rs73656561	1.00[EUR][1000 genomes]
rs73656564	1.00[EUR][1000 genomes]
rs7850319	1.00[EUR][1000 genomes]
rs7854738	1.00[EUR][1000 genomes]
rs7860019	1.00[EUR][1000 genomes]
rs892647	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893598	chr9:98508628-98645674	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98514800-98527200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr9:98516600-98527200	Weak transcription	Fetal Intestine Large	intestine
3	chr9:98518200-98526200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:98518200-98528800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr9:98519800-98526400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:98520000-98526200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr9:98520000-98526200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr9:98520000-98526200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr9:98520000-98526200	Weak transcription	HepG2	liver
10	chr9:98520000-98527200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:98521800-98526400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr9:98523400-98526400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr9:98523400-98526400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr9:98523600-98526200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:98523600-98526400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr9:98523600-98526600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr9:98523600-98526800	Weak transcription	Colon Smooth Muscle	Colon
18	chr9:98523800-98526200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr9:98523800-98526400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr9:98523800-98526400	Weak transcription	Fetal Lung	lung
21	chr9:98524000-98525200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr9:98524000-98526400	Weak transcription	Fetal Stomach	stomach
23	chr9:98524200-98526000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr9:98524800-98525200	Enhancers	GM12878-XiMat	blood

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